Add installation with requirements

README.md

@@ -5,9 +5,7 @@ The aim of this project is to process the data obtained after mapping metabolite
 
 
 ## Usage
-This library is designed to give contextualization to a list of metabolite identifiers.
-Thanks to metabolite networks and metabolic pathways.
-It can be used to obtain the best mapping results or for list validation.
+This library is designed to give biological contextualization to a list of metabolite identifiers, querying metabolite networks and metabolic pathways.
 
 
 ### Requirements
@@ -35,11 +33,20 @@ You will need following Python>=3.8 librairies :
 
 ### Installation
 
-You can install the package with 
+Clone repository: 
 ```
 git clone https://unh-pfem-gitlab.ara.inrae.fr/mth/mth2-wp1/task0-metabolic-pathways-processing-mapping-results.git
 ```
 
+Create environment with conda:
+```
+conda create --name mapping_metabo --file requirements.txt
+```
+Or using pip:
+```
+pip install -r requirements.txt
+```
+
 Then you can test the installation following the [example](http://example.fr).
 
 

requirements.txt

+backoff==2.2.1
+certifi==2024.7.4
+chardet==5.2.0
+charset-normalizer==3.3.2
+colorbrewer==0.2.0
+colour==0.1.5
+contourpy==1.2.1
+cycler==0.12.1
+decorator==5.1.1
+fonttools==4.53.1
+fpdf==1.7.2
+idna==3.7
+igraph==0.11.6
+kiwisolver==1.4.5
+matplotlib==3.9.1
+networkx==3.3
+numpy==2.0.0
+packaging==24.1
+pandas==2.2.2
+pillow==10.4.0
+py4cytoscape==1.9.0
+pyparsing==3.1.2
+python-dateutil==2.9.0.post0
+pytz==2024.1
+requests==2.32.3
+scipy==1.14.0
+seaborn==0.13.2
+six==1.16.0
+texttable==1.7.0
+tzdata==2024.1
+urllib3==2.2.2