Manual citation

README.md

@@ -13,7 +13,6 @@
 * `R` >= 4.2.3 recommended, package `lidR` >= 4.0.0 required.
 * Install from [CRAN](https://cran.r-project.org/package=lidaRtRee), by running in the `R` console: `install.packages("lidaRtRee")`.
 * Build development version from source with the `devtools` package: `devtools::install_git("https://forgemia.inra.fr/lidar/lidaRtRee")`.
-* Browse [source code](https://forgemia.inra.fr/lidar/lidaRtRee).
 
 # Tutorials
 
@@ -33,6 +32,6 @@ Tutorials using `lidaRtRee` functions are available in the [vignettes](https://f
 
 `lidaRtRee` development (2018-2021) was funded by the [ADEME](https://www.ademe.fr/en) (french Agency for Ecological Transition) through the [PROTEST](https://protest.inrae.fr/) project (grant 1703C0069 of the GRAINE program).
 
-[<img src="./man/figures/logo-ademe-republique-francaise.jpg" alt="logo-ademe-republique-francaise" width="300"/>](https://www.ademe.fr/en)
+[<img src="man/figures/logo-ademe-republique-francaise.jpg" alt="logo-ademe-republique-francaise" width="300"/>](https://www.ademe.fr/en)
 <br>
-[<img src="./man/figures/logo_inrae.png" alt="logo_inrae" width="330"/>](https://www.inrae.fr/en)
+[<img src="man/figures/logo_inrae.png" alt="logo_inrae" width="330"/>](https://www.inrae.fr/en)

_pkgdown.yml

 url: https://lidar.pages.mia.inra.fr/lidaRtRee/
 template:
   bootstrap: 5
+home:
+  title: R package for forest analysis with airborne laser scanning (lidar) data
+  links:
+  - text: Browse source code
+    href: https://forgemia.inra.fr/lidar/lidaRtRee
 

docs/authors.html

@@ -68,15 +68,17 @@
       <p></p>
 
       <p>Monnet J (2023).
-<em>lidaRtRee: Forest Analysis with Airborne Laser Scanning (LiDAR) Data</em>.
-R package version 4.0.6, https://forgemia.inra.fr/lidar/lidaRtRee, <a href="https://lidar.pages.mia.inra.fr/lidaRtRee/">https://lidar.pages.mia.inra.fr/lidaRtRee/</a>. 
+<em>lidaRtRee: forest analysis with airborne laser scanning (LiDAR) data</em>.
+<a href="https://doi.org/10.57745/JV66MZ" class="external-link">doi:10.57745/JV66MZ</a>, R package version 4.0.6, <a href="https://forgemia.inra.fr/lidar/lidaRtRee/" class="external-link">https://forgemia.inra.fr/lidar/lidaRtRee/</a>. 
 </p>
       <pre>@Manual{,
-  title = {lidaRtRee: Forest Analysis with Airborne Laser Scanning (LiDAR) Data},
   author = {Jean-Matthieu Monnet},
+  publisher = {Recherche Data Gouv},
+  title = {{lidaRtRee}: forest analysis with airborne laser scanning ({LiDAR}) data},
   year = {2023},
-  note = {R package version 4.0.6, https://forgemia.inra.fr/lidar/lidaRtRee},
-  url = {https://lidar.pages.mia.inra.fr/lidaRtRee/},
+  note = {R package version 4.0.6},
+  doi = {10.57745/JV66MZ},
+  url = {https://forgemia.inra.fr/lidar/lidaRtRee/},
 }</pre>
     </div>
   </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>

docs/index.html

@@ -15,12 +15,12 @@
     features useful for e.g. habitat suitability modeling (Glad et al. (2020) 
     <doi:10.1002/rse2.117>) and forest maturity mapping (Fuhr et al. (2022) 
     <doi:10.1002/rse2.274>).">
-<title>Forest Analysis with Airborne Laser Scanning (LiDAR) Data • lidaRtRee</title>
+<title>R package for forest analysis with airborne laser scanning (lidar) data • lidaRtRee</title>
 <script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
 <link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
 <script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous">
 <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous">
-<!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Forest Analysis with Airborne Laser Scanning (LiDAR) Data">
+<!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="R package for forest analysis with airborne laser scanning (lidar) data">
 <meta property="og:description" content="Provides functions for forest objects detection, structure metrics 
     computation, model calibration and mapping with airborne laser scanning:
     co-registration of field plots (Monnet and Mermin (2014) 
@@ -108,7 +108,6 @@
 <code>R</code> &gt;= 4.2.3 recommended, package <code>lidR</code> &gt;= 4.0.0 required.</li>
 <li>Install from <a href="https://cran.r-project.org/package=lidaRtRee" class="external-link">CRAN</a>, by running in the <code>R</code> console: <code>install.packages("lidaRtRee")</code>.</li>
 <li>Build development version from source with the <code>devtools</code> package: <code>devtools::install_git("https://forgemia.inra.fr/lidar/lidaRtRee")</code>.</li>
-<li>Browse <a href="https://forgemia.inra.fr/lidar/lidaRtRee" class="external-link">source code</a>.</li>
 </ul>
 </div>
 <div class="section level1">
@@ -142,7 +141,7 @@
 <h1 id="acknowledgements--funding">Acknowledgements / funding<a class="anchor" aria-label="anchor" href="#acknowledgements--funding"></a>
 </h1>
 <p><code>lidaRtRee</code> development (2018-2021) was funded by the <a href="https://www.ademe.fr/en" class="external-link">ADEME</a> (french Agency for Ecological Transition) through the <a href="https://protest.inrae.fr/" class="external-link">PROTEST</a> project (grant 1703C0069 of the GRAINE program).</p>
-<p><a href="https://www.ademe.fr/en" class="external-link"><img src="./reference/figures/logo-ademe-republique-francaise.jpg" alt="logo-ademe-republique-francaise" width="300"></a> <br><a href="https://www.inrae.fr/en" class="external-link"><img src="./reference/figures/logo_inrae.png" alt="logo_inrae" width="330"></a></p>
+<p><a href="https://www.ademe.fr/en" class="external-link"><img src="reference/figures/logo-ademe-republique-francaise.jpg" alt="logo-ademe-republique-francaise" width="300"></a> <br><a href="https://www.inrae.fr/en" class="external-link"><img src="reference/figures/logo_inrae.png" alt="logo_inrae" width="330"></a></p>
 </div>
 
   </main><aside class="col-md-3"><div class="links">
@@ -150,6 +149,7 @@
 <ul class="list-unstyled">
 <li><a href="https://cloud.r-project.org/package=lidaRtRee" class="external-link">View on CRAN</a></li>
 <li><a href="https://forgemia.inra.fr/lidar/lidaRtRee/-/issues" class="external-link">Report a bug</a></li>
+<li><a href="https://forgemia.inra.fr/lidar/lidaRtRee" class="external-link">Browse source code</a></li>
 </ul>
 </div>
 

inst/CITATION

+bibentry(
+"Manual",
+author = "Jean-Matthieu Monnet",
+publisher = "Recherche Data Gouv",
+title = "{lidaRtRee}: forest analysis with airborne laser scanning ({LiDAR}) data",
+year = 2023,
+note = "R package version 4.0.6",
+doi = "10.57745/JV66MZ",
+url = "https://forgemia.inra.fr/lidar/lidaRtRee/"
+)
+