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Variant_calling/MergeByChromosome/06.merge_chrom.sh

+#!/bin/bash
+#!/bin/bash
+#SBATCH --mem=40G
+#SBATCH -c 8
+
+#SBATCH --partition=dgimi-eha
+
+cd /lustre/durandk/HELICOVERPA/ref_HZEA/VARIANT_CALLING/CHROM_FINI
+
+/storage/simple/projects/faw_adaptation/programs/vcftools_0.1.13/bin/vcf-concat *.SNP.recode.vcf.gz | /storage/simple/projects/faw_adaptation/programs/htslib-1.9/bgzip > H_A_95_surjeet.SNP.vcf.gz
+/storage/simple/projects/faw_adaptation/programs/htslib-1.9/tabix -p vcf H_A_95_surjeet.SNP.vcf.gz
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