Upload New File

Treemix/imput_data_prep.sh

+#!/bin/bash
+#SBATCH -p dgimi-eha
+#SBATCH 
+
+module load cv-standard
+module load python/2.7.12
+
+cd /lustre/durandk/HELICOVERPA/TREEMIX/Results/file_vcf2treemix_script
+chmod  777 /lustre/durandk/HELICOVERPA/TREEMIX/SCRIPT/plink2treemix.py
+chmod 7777 /lustre/durandk/HELICOVERPA/TREEMIX/SCRIPT/vcf2treemix.sh 
+#cp /storage/simple/projects/faw_adaptation/Merged_vcf/Helicoverpa/31CHROM_VCF/DATA_138.Helicoverpa_5122024.filtered09_renamedV2.recode.vcf.gz  .
+/lustre/durandk/HELICOVERPA/TREEMIX/SCRIPT/vcf2treemix.sh  /lustre/durandk/HELICOVERPA/TREEMIX/Results/file_vcf2treemix_script/DATA_138.Helicoverpa_5122024.filtered09_renamedV2.recode.vcf.gz  /lustre/durandk/HELICOVERPA/TREEMIX/SCRIPT/pop.clust
+
+
+
+
+
+
+