better fix for conda path from non interactive shells

resources/checkConda.sh

-#!/bin/bash
-id -u
-echo $0
-command -v conda
-# env
-# echo "#######################"
-# if ! [ "$(command -v conda)" ]; then
-# if [ -f $HOME/miniconda3/etc/profile.d/conda.sh ]
-# then
-#   source $HOME/miniconda3/etc/profile.d/conda.sh
-#   if ! [ "$(command -v conda)" ]; then
-#   echo 'Error: Please Make Sure conda is in your $PATH.' >&2
-# fi
-# fi
-# fi

resources/source.sh

-#!/bin/bash
-if [ -f ~/.$(basename $SHELL)rc  ]; then
-  source ~/.$(basename $SHELL)rc
-elif [ -f ~/bash_profile ]; then
-  source ~/bash_profile
-fi
\ No newline at end of file

src/backend/snakemake.js

@@ -7,7 +7,10 @@ const spawnChild = async (body, profile, uniqueDir, homeDir, unlock) => {
     const logfile = path.join(uniqueDir, "biseps.txt");
     const output = fs.openSync(logfile, "a");
     const workflow = path.join(__dirname, "../resources/biseps/");
-    const command = process.platform == "win32" ? "conda" : `conda`;
+    const command =
+        process.platform == "win32"
+            ? "conda"
+            : `$(head -n 1 $HOME/.conda/environments.txt)/bin/conda`;
     const options = {
         slient: false,
         // detached: true,

src/backend/spawnMongod.js

@@ -7,7 +7,10 @@ const spawnChild = async () => {
     const homedir = require("os").homedir();
     const logfile = path.join(homedir, "mongoWindow.txt");
     const output = fs.openSync(logfile, "a");
-    const command = process.platform == "win32" ? "conda" : `conda`;
+    const command =
+        process.platform == "win32"
+            ? "conda"
+            : `$(head -n 1 $HOME/.conda/environments.txt)/bin/conda`;
 
     const options = {
         slient: false,

src/main.js

@@ -30,7 +30,7 @@ console.log(bisepsTemp);
 console.log(process.platform);
 process.platform == "darwin" || process.platform == "linux"
   ? exec(
-      "bash  " + path.join(__dirname, "resources/checkConda.sh"),
+      `${process.platform == "win32" ? "where conda" : "command -v conda"}`,
       (error, stdout, stderr) => {
         if (error) {
           console.log(`error: ${error.message}`);