Merge branch 'master' of forgemia.inra.fr:skander.hatira/bisepsgui

testing

Merge branch 'master' of forgemia.inra.fr:skander.hatira/bisepsgui
testing
cb392549 · Skander Hatira · 75737186 · df6118e8 · cb392549 · cb392549
Commit cb392549 authored 3 years ago by Skander Hatira
--- a/resources/mongoWindows.yaml
+++ b/resources/mongoWindows.yaml
+name: mongo
+channels:
+  - anaconda
+  - defaults
+dependencies:
+  - ca-certificates=2020.10.14=0
+  - krb5=1.18.2=hc04afaa_0
+  - libcurl=7.71.1=h2a8f88b_1
+  - libssh2=1.9.0=h7a1dbc1_1
+  - mongodb=4.0.3=he170510_0
+  - openssl=1.1.1h=he774522_0
+  - vc=14.1=h0510ff6_4
+  - vs2015_runtime=14.16.27012=hf0eaf9b_3
+  - zlib=1.2.11=vc14h1cdd9ab_1
--- a/resources/snakemakeWindows.yaml
+++ b/resources/snakemakeWindows.yaml
+name: snakemake
+channels:
+  - bioconda
+  - conda-forge
+  - defaults
+dependencies:
+  - aioeasywebdav=2.4.0=py39hcbf5309_1001
+  - aiohttp=3.7.4.post0=py39hb82d6ee_0
+  - appdirs=1.4.4=pyh9f0ad1d_0
+  - async-timeout=3.0.1=py_1000
+  - attrs=21.2.0=pyhd8ed1ab_0
+  - backports=1.0=py_2
+  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
+  - bcrypt=3.2.0=py39hb82d6ee_1
+  - boto3=1.18.36=pyhd8ed1ab_0
+  - botocore=1.21.36=pyhd8ed1ab_0
+  - brotlipy=0.7.0=py39hb82d6ee_1001
+  - ca-certificates=2021.5.30=h5b45459_0
+  - cachetools=4.2.2=pyhd8ed1ab_0
+  - cairo=1.16.0=hb19e0ff_1008
+  - certifi=2021.5.30=py39hcbf5309_0
+  - cffi=1.14.6=py39h0878f49_0
+  - chardet=4.0.0=py39hcbf5309_1
+  - configargparse=1.5.2=pyhd8ed1ab_0
+  - cryptography=3.4.7=py39hd8d06c1_0
+  - datrie=0.8.2=py39hb82d6ee_2
+  - decorator=5.0.9=pyhd8ed1ab_0
+  - docutils=0.17.1=py39hcbf5309_0
+  - dropbox=10.9.0=pyhd3deb0d_0
+  - expat=2.4.1=h39d44d4_0
+  - filechunkio=1.8=py_2
+  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
+  - font-ttf-inconsolata=3.000=h77eed37_0
+  - font-ttf-source-code-pro=2.038=h77eed37_0
+  - font-ttf-ubuntu=0.83=hab24e00_0
+  - fontconfig=2.13.1=h1989441_1005
+  - fonts-conda-ecosystem=1=0
+  - fonts-conda-forge=1=0
+  - freetype=2.10.4=h546665d_1
+  - fribidi=1.0.10=h8d14728_0
+  - ftputil=5.0.1=pyhd8ed1ab_0
+  - getopt-win32=0.1=h8ffe710_0
+  - gettext=0.19.8.1=h1a89ca6_1005
+  - gitdb=4.0.7=pyhd8ed1ab_0
+  - gitpython=3.1.18=pyhd8ed1ab_0
+  - google-api-core=2.0.1=pyhd8ed1ab_0
+  - google-auth=2.0.2=pyh6c4a22f_0
+  - google-cloud-core=2.0.0=pyh6c4a22f_0
+  - google-cloud-storage=1.42.0=pyh6c4a22f_0
+  - google-crc32c=1.1.2=py39h3fc79e4_0
+  - google-resumable-media=2.0.2=pyh6c4a22f_0
+  - googleapis-common-protos=1.53.0=py39h35db3c3_0
+  - graphite2=1.3.13=1000
+  - graphviz=2.49.0=hefbd956_0
+  - grpcio=1.38.1=py39hb76b349_0
+  - gts=0.7.6=h7c369d9_2
+  - harfbuzz=2.9.0=hc601d6f_0
+  - icu=68.1=h0e60522_0
+  - idna=2.10=pyh9f0ad1d_0
+  - importlib-metadata=4.8.1=py39hcbf5309_0
+  - intel-openmp=2021.3.0=h57928b3_3372
+  - jbig=2.1=h8d14728_2003
+  - jinja2=3.0.1=pyhd8ed1ab_0
+  - jmespath=0.10.0=pyh9f0ad1d_0
+  - jpeg=9d=h8ffe710_0
+  - jsonschema=3.2.0=pyhd8ed1ab_3
+  - lerc=2.2.1=h0e60522_0
+  - libblas=3.9.0=11_win64_mkl
+  - libcblas=3.9.0=11_win64_mkl
+  - libcrc32c=1.1.1=h0e60522_2
+  - libdeflate=1.7=h8ffe710_5
+  - libffi=3.3=h0e60522_2
+  - libgd=2.3.2=h138e682_0
+  - libglib=2.68.4=h1e62bf3_0
+  - libiconv=1.16=he774522_0
+  - liblapack=3.9.0=11_win64_mkl
+  - libpng=1.6.37=h1d00b33_2
+  - libprotobuf=3.17.2=h7755175_1
+  - libtiff=4.3.0=h0c97f57_1
+  - libwebp=1.2.1=h57928b3_0
+  - libwebp-base=1.2.1=h8ffe710_0
+  - libxcb=1.13=hcd874cb_1003
+  - libxml2=2.9.12=hf5bbc77_0
+  - lz4-c=1.9.3=h8ffe710_1
+  - m2w64-gcc-libgfortran=5.3.0=6
+  - m2w64-gcc-libs=5.3.0=7
+  - m2w64-gcc-libs-core=5.3.0=7
+  - m2w64-gmp=6.1.0=2
+  - m2w64-libwinpthread-git=5.0.0.4634.697f757=2
+  - markupsafe=2.0.1=py39hb82d6ee_0
+  - mkl=2021.3.0=hb70f87d_564
+  - msys2-conda-epoch=20160418=1
+  - multidict=5.1.0=py39hb82d6ee_1
+  - networkx=2.5=py_0
+  - numpy=1.21.2=py39h6635163_0
+  - openssl=1.1.1l=h8ffe710_0
+  - pandas=1.3.2=py39h2e25243_0
+  - pango=1.48.9=hd84fcdd_0
+  - paramiko=2.7.2=pyh9f0ad1d_0
+  - pcre=8.45=h0e60522_0
+  - pip=21.2.4=pyhd8ed1ab_0
+  - pixman=0.40.0=h8ffe710_0
+  - prettytable=2.2.0=pyhd8ed1ab_0
+  - protobuf=3.17.2=py39h415ef7b_0
+  - psutil=5.8.0=py39hb82d6ee_1
+  - pthread-stubs=0.4=hcd874cb_1001
+  - pyasn1=0.4.8=py_0
+  - pyasn1-modules=0.2.7=py_0
+  - pycparser=2.20=pyh9f0ad1d_2
+  - pygments=2.10.0=pyhd8ed1ab_0
+  - pygraphviz=1.7=py39he8c86ab_0
+  - pynacl=1.4.0=py39hb3671d1_2
+  - pyopenssl=20.0.1=pyhd8ed1ab_0
+  - pyrsistent=0.17.3=py39hb82d6ee_2
+  - pysftp=0.2.9=py_1
+  - pysocks=1.7.1=py39hcbf5309_3
+  - python=3.9.7=h7840368_0_cpython
+  - python-dateutil=2.8.2=pyhd8ed1ab_0
+  - python-irodsclient=1.0.0=pyhd8ed1ab_0
+  - python_abi=3.9=2_cp39
+  - pytz=2021.1=pyhd8ed1ab_0
+  - pyu2f=0.1.5=pyhd8ed1ab_0
+  - pyyaml=5.4.1=py39hb82d6ee_1
+  - ratelimiter=1.2.0=py_1002
+  - requests=2.25.1=pyhd3deb0d_0
+  - rsa=4.7.2=pyh44b312d_0
+  - s3transfer=0.5.0=pyhd8ed1ab_0
+  - setuptools=57.4.0=py39hcbf5309_0
+  - six=1.16.0=pyh6c4a22f_0
+  - smmap=3.0.5=pyh44b312d_0
+  - snakemake=5.5.4=1
+  - snakemake-minimal=5.5.4=py_2
+  - sqlite=3.36.0=h8ffe710_0
+  - tbb=2021.3.0=h2d74725_0
+  - typing-extensions=3.10.0.0=hd8ed1ab_0
+  - typing_extensions=3.10.0.0=pyha770c72_0
+  - tzdata=2021a=he74cb21_1
+  - ucrt=10.0.20348.0=h57928b3_0
+  - urllib3=1.26.6=pyhd8ed1ab_0
+  - vc=14.2=hb210afc_5
+  - vs2015_runtime=14.29.30037=h902a5da_5
+  - wcwidth=0.2.5=pyh9f0ad1d_2
+  - wheel=0.37.0=pyhd8ed1ab_1
+  - win_inet_pton=1.1.0=py39hcbf5309_2
+  - wrapt=1.12.1=py39hb82d6ee_3
+  - xmlrunner=1.7.7=py_0
+  - xorg-kbproto=1.0.7=hcd874cb_1002
+  - xorg-libice=1.0.10=hcd874cb_0
+  - xorg-libsm=1.2.3=hcd874cb_1000
+  - xorg-libx11=1.7.2=hcd874cb_0
+  - xorg-libxau=1.0.9=hcd874cb_0
+  - xorg-libxdmcp=1.1.3=hcd874cb_0
+  - xorg-libxext=1.3.4=hcd874cb_1
+  - xorg-libxpm=3.5.13=hcd874cb_0
+  - xorg-libxt=1.2.1=hcd874cb_2
+  - xorg-xextproto=7.3.0=hcd874cb_1002
+  - xorg-xproto=7.0.31=hcd874cb_1007
+  - xz=5.2.5=h62dcd97_1
+  - yaml=0.2.5=he774522_0
+  - yarl=1.5.1=py39h4cdbadb_0
+  - zipp=3.5.0=pyhd8ed1ab_0
+  - zlib=1.2.11=h62dcd97_1010
+  - zstd=1.5.0=h6255e5f_0
--- a/src/main.js
+++ b/src/main.js
@@ -60,7 +60,7 @@ exec(
    process.platform == "darwin"
      ? "mongodbMac.yaml"
      : process.platform == "win32"
-      ? "mongodbWin.yaml"
+      ? "mongodbWindows.yaml"
      : "mongodbLinux.yaml"
  } -n bisepsMongo || true`,
  (error, stdout, stderr) => {
@@ -80,7 +80,7 @@ exec(
    process.platform == "darwin"
      ? "snakemakeMac.yaml"
      : process.platform == "win32"
-      ? "snakemakeWin.yaml"
+      ? "snakemakeWindows.yaml"
      : "snakemakeLinux.yaml"
  } -n bisepsSnakemake || true`,
  (error, stdout, stderr) => {