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Commit 8d8be874 authored by Skander Hatira's avatar Skander Hatira
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switching to native fs module

parent a60d63a9
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const createSymlink = (body, uniqueDir) => {
const fs = require("fs-extra");
const fs = require("fs");
const path = require("path");
body.units.map((unit) => {
fs.symlinkSync(
fs.symlink(
unit.fq1,
path.join(uniqueDir, "data", path.basename(unit.fq1)),
"file"
);
fs.symlinkSync(
fs.symlink(
unit.fq2,
path.join(uniqueDir, "data", path.basename(unit.fq2)),
"file"
);
});
fs.symlinkSync(
fs.symlink(
body.genome,
path.join(uniqueDir, "resources", "genome", path.basename(body.genome)),
"file"
);
body.customAdapters == ""
? ""
: fs.symlinkSync(
: fs.symlink(
body.adapters,
path.join(
uniqueDir,
......
const createSymlinkComparison = (body, uniqueDir) => {
const fs = require("fs-extra");
const fs = require("fs");
const path = require("path");
body.comparisons.map((comparison) => {
const controlFiles = comparison.control.split(",");
const treatmentFiles = comparison.treatment.split(",");
for (const file in controlFiles) {
fs.symlinkSync(
fs.symlink(
controlFiles[file],
path.join(uniqueDir, "data", path.basename(controlFiles[file])),
"file"
);
}
for (const file in treatmentFiles) {
fs.symlinkSync(
fs.symlink(
treatmentFiles[file],
path.join(
......@@ -25,13 +25,13 @@ const createSymlinkComparison = (body, uniqueDir) => {
);
}
});
fs.symlinkSync(
fs.symlink(
body.genome,
path.join(uniqueDir, "resources", "genome", path.basename(body.genome)),
"file"
);
body.annot !== ""
? fs.symlinkSync(
? fs.symlink(
body.annot,
path.join(
uniqueDir,
......
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