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V1.15.0
New features and Improvements - Update bwa version in fastqScreen conf file - Improve ressources for fastQC, Sortmerna, Qualimap, - Change defaut path to shared_modules, stored on genobioinfo - Run Qualimap in the RNA pipeline - DTM mode force to keep the workdir Bug fixed - GC_DROPOUT value is now got from report in DTM mode
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V1.14.0
Merges requests : !11, !12, !13, !14 New features & improvements : - STAR's logs are now kept #80 - Merge of fastq files by lanes for AVITI data #79 - Keep the wordir if DTM mode is activated #81 - New function to manage requested ressources #84 Bug fixed : - New default value for the lane in Treatment_demux_run (because of changes in shared_modules) #83
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V1.10.0
New features & improvement - New config for NGL-Bi related shared_modules #78 - Add GC bias analysis process in DTM mode (performe analysis and export results in the CSV) #76 - Multipool analysis per lane is now possible (based on multiline jFlow file) #75 Bug fixed - New config for dev mode #77 - Remove NA in demultiplexStat for MiSeq analysis #73
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V1.8.0
New features and improvements : - Add diversity QC subworkflow for 16s/amplicon dataset #71 - Writing of docs/usage.md #74 - Increase memory for seqtk sample process #72 Bug fixed : - Replace Nas by 0 in demultiplexStat #73
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V1.0.0
Merge : !2 The pipeline is now ready for DNA and RTL data, if the jFlow file contains only one line. Other condition is : one project on the lane. These limitations will remove soon # New features - Add scripts for DTM - Change trim sample method in the MultiQC config file - Add fastq subsetting step in the CORE pipeline - Add email sending steps - Change params case and more...