... | ... | @@ -175,7 +175,7 @@ Example : |
|
|
### --variant
|
|
|
|
|
|
This file contains for each the variation informations of the contigs contigs : snps, insertion or deletion. The expected file format is VCF (Variant Calling Format).
|
|
|
If the VCF file has been produced using GATK [http://www.broadinstitute.org/gatk/], the allelic count per library will be extracted from the VCF file.
|
|
|
If the VCF file has been produced using [GATK](http://www.broadinstitute.org/gatk/), the allelic count per library will be extracted from the VCF file.
|
|
|
|
|
|
Here is the list of attributes for this options :
|
|
|
* file : in VCF [http://vcftools.sourceforge.net/specs.html]
|
... | ... | |