... | ... | @@ -104,6 +104,7 @@ You have then to edit the application.properties file. |
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# Test your installation
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The application embed some test files, enter the following command lines to test the system:
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```bash
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[user@hostname:~] python bin/ngspipelines_cli.py addinstance --instance-name myinstance
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[user@hostname:~] python ./bin/ngspipelines_cli.py load-rnaseqdenovo --instance-name myinstance --project-name DemoBrain --species "Dicentrarchus labrax" --species-common-name "SeaBass" --project-description "SeaBass brain transcriptome 500 examples contigs" \
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--assembly file=workflows/rnaseqdenovo/data/load/contigs.fasta software-name=oases software-parameters="" software-version="0.2.06" comments="Transcript assembly" \
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... | ... | @@ -111,7 +112,8 @@ The application embed some test files, enter the following command lines to test |
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--alignment files=workflows/rnaseqdenovo/data/load/brain_400.bam software-name=bwa software-version=2.2.26 software-parameters=samse --image workflows/rnaseqdenovo/data/DLabrax.png \
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--assembly-annot file=workflows/rnaseqdenovo/data/load/best_annotation_file.gff3 software-name=blastall software-parameters="-e 10e-10" software-version="2.2.26" comments="Best annotations against swissprot" is-best
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[user@hostname:~] python bin/ngspipelines_cli.py runinstance --instance-name myinstance
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Once done, a browser should open a new window with the following display: <br />
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```
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Once done, a browser should open a new window with the following display:
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[[File:first_install_completed.png]]
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# Full test of your installation
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... | ... | |