... | ... | @@ -127,6 +127,7 @@ On real NGS data it is recommended to increase memory used by several softwares. |
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## Change memory in application.properties file.
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SGE exemple :
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```bash
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[components]
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Blast.batch_options = -l mem=20G -l h_vmem=20G -q wflowq
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Blast2annot.batch_options = -l mem=20G -l h_vmem=20G -q wflowq
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... | ... | @@ -142,10 +143,12 @@ SGE exemple : |
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GatkRecalibration.batch_options = -l mem=25G -l h_vmem=25G -q wflowq
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VariantPreprocess.batch_options = -l mem=25G -l h_vmem=25G -q wflowq
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tSNPannot.batch_options = -l mem=30G -l h_vmem=30G -q wflowq
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```
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## Change memory in workflows/rnaseqdenovo/__init__.py
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Exemple line 147 to 150:
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```python
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def process(self):
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JAVA_LARGE_MEM = 20
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JAVA_HUGE_MEM = 40
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NB_SPLIT = 200
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``` |
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\ No newline at end of file |