Add miseq has library allowed.

workflows/rnaseqdenovo/__init__.py

@@ -156,8 +156,8 @@ class RNAseqDenovo (ApplicationWithoutReferenceGenome):
 
         # Check librairies sequencers
         for lib_arg in self.library:
-            if lib_arg["sequencer"] not in ("HiSeq2000", "ILLUMINA","SLX","SOLEXA","SOLID","454","COMPLETE","PACBIO","IONTORRENT","CAPILLARY","HELICOS","UNKNOWN") :
-                raise ValueError( "The sequencer '" + lib_arg["sequencer"] + "' is not valid. Sequencer must be in : ILLUMINA, SLX, SOLEXA, SOLID, 454, COMPLETE, PACBIO, IONTORRENT, CAPILLARY, HELICOS, UNKNOWN." )
+            if lib_arg["sequencer"] not in ("MiSeq", "HiSeq2000","HiSeq3000","HiSeq2500", "ILLUMINA","SLX","SOLEXA","SOLID","454","COMPLETE","PACBIO","IONTORRENT","CAPILLARY","HELICOS","UNKNOWN") :
+                raise ValueError( "The sequencer '" + lib_arg["sequencer"] + "' is not valid. Sequencer must be in : MiSeq, HiSeqXX00, ILLUMINA, SLX, SOLEXA, SOLID, 454, COMPLETE, PACBIO, IONTORRENT, CAPILLARY, HELICOS, UNKNOWN." )
 
         # Contigs split
         split = self.add_component( "SplitSeq", [self.assembly["file"], NB_SPLIT] )