Ng6 ont qc improvement

ui/nG6/pi1/analyzes/Run_stats.tpl

@@ -109,7 +109,7 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 								{if ($head == 'median_read_quality')  or ($head == 'mean_read_quality')}
 									<td><label>{$head}</label></td>
 									<td>{($quality.$head)|number_format:2:',':' '}</td>
-								{elseif $head|strstr:"nb_read_Q"}
+								{elseif $head|strstr:"nb_read"}
 									<td><label>{$head}</label></td>
 									<td>{($quality.$head)|number_format:0:',':' '} ({($quality.$head / $basic.nb_reads*100)|number_format:2:',':' '}%)</td>
 								{else}
@@ -178,8 +178,6 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 						<th class = "numeric-sort"  id="th_id_{$th_id}">Median read_quality</th>
 					{elseif $head == 'N50_read_length'}
 						<th class = "numeric-sort"  id="th_id_{$th_id}">N50 read_length</th>
-					{elseif $head == 'L50_read_length'}
-						<th class = "numeric-sort"  id="th_id_{$th_id}">L50 read_length</th>
 					{elseif $head == 'barcode_score'}
 						<th class = "numeric-sort"  id="th_id_{$th_id}">Barcode_score</th>
 					{elseif $head == 'nb_read_Q>10'}
@@ -190,6 +188,10 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 						<th class = "numeric-sort"  id="th_id_{$th_id}">Median yield_per_sec</th>
 					{elseif $head == 'nb_actif_channel'}
 						<th class = "numeric-sort"  id="th_id_{$th_id}">Nb actif_channel</th>
+					{elseif $head == 'nb_reads_utils'}
+						<th class = "numeric-sort"  id="th_id_{$th_id}">Nb actif_channel</th>
+					{elseif $head == 'nb_bases_utils'}
+						<th class = "numeric-sort"  id="th_id_{$th_id}">Nb actif_channel</th>
 					{/if}
 					{$th_id = $th_id +1}
 				{/foreach}
@@ -217,8 +219,6 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 								<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:1:',':' '}</th>
 							{elseif $head == 'N50_read_length'}
 								<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
-							{elseif $head == 'L50_read_length'}
-								<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
 							{elseif $head == 'barcode_score'}
 								<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:1:',':' '}</th>
 							{elseif $head == 'nb_read_Q>10'}
@@ -229,6 +229,10 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 								<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
 							{elseif $head == 'nb_actif_channel'}
 								<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
+							{elseif $head == 'nb_reads_utils'}
+								<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
+							{elseif $head == 'nb_bases_utils'}
+								<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
 							{/if}
 							
 							{$col_id = $col_id + 1}
@@ -328,6 +332,9 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 				<li><strong>total_bases_Q>N</strong> : 
 					The total number of bases for the reads that have a quality > N.
 				</li>
+				<li><strong>nb_read/bases_utils</strong> : 
+					The total number of reads/bases for the reads that have a quality > 7 and a length > 3000bp.
+				</li>
 			</ul>
 		</span>
 	</div>