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Ng6 ont qc improvement

Merged Maxime Manno requested to merge nG6_ont-qc_improvement into master
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@@ -109,7 +109,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{if ($head == 'median_read_quality') or ($head == 'mean_read_quality')}
<td><label>{$head}</label></td>
<td>{($quality.$head)|number_format:2:',':' '}</td>
{elseif $head|strstr:"nb_read_Q"}
{elseif $head|strstr:"nb_read"}
<td><label>{$head}</label></td>
<td>{($quality.$head)|number_format:0:',':' '} ({($quality.$head / $basic.nb_reads*100)|number_format:2:',':' '}%)</td>
{else}
@@ -178,8 +178,6 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<th class = "numeric-sort" id="th_id_{$th_id}">Median read_quality</th>
{elseif $head == 'N50_read_length'}
<th class = "numeric-sort" id="th_id_{$th_id}">N50 read_length</th>
{elseif $head == 'L50_read_length'}
<th class = "numeric-sort" id="th_id_{$th_id}">L50 read_length</th>
{elseif $head == 'barcode_score'}
<th class = "numeric-sort" id="th_id_{$th_id}">Barcode_score</th>
{elseif $head == 'nb_read_Q>10'}
@@ -190,6 +188,10 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<th class = "numeric-sort" id="th_id_{$th_id}">Median yield_per_sec</th>
{elseif $head == 'nb_actif_channel'}
<th class = "numeric-sort" id="th_id_{$th_id}">Nb actif_channel</th>
{elseif $head == 'nb_reads_utils'}
<th class = "numeric-sort" id="th_id_{$th_id}">Nb actif_channel</th>
{elseif $head == 'nb_bases_utils'}
<th class = "numeric-sort" id="th_id_{$th_id}">Nb actif_channel</th>
{/if}
{$th_id = $th_id +1}
{/foreach}
@@ -217,8 +219,6 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:1:',':' '}</th>
{elseif $head == 'N50_read_length'}
<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
{elseif $head == 'L50_read_length'}
<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
{elseif $head == 'barcode_score'}
<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:1:',':' '}</th>
{elseif $head == 'nb_read_Q>10'}
@@ -229,6 +229,10 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
{elseif $head == 'nb_actif_channel'}
<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
{elseif $head == 'nb_reads_utils'}
<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
{elseif $head == 'nb_bases_utils'}
<th id="sample_{$i}_col_{$col_id}">{($sample_results.$head)|number_format:0:',':' '}</th>
{/if}
{$col_id = $col_id + 1}
@@ -328,6 +332,9 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<li><strong>total_bases_Q>N</strong> :
The total number of bases for the reads that have a quality > N.
</li>
<li><strong>nb_read/bases_utils</strong> :
The total number of reads/bases for the reads that have a quality > 7 and a length > 3000bp.
</li>
</ul>
</span>
</div>
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