Test pipelines with slurm
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illumina_qc - #34 (closed) : need to add "load module system/R-3.4.3" to the .bashrc file of the user for this pipeline to work
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illumina_rnaseq (without annotation which is buggy) -
illumina_diversity_qc -
gene_diversity -
methylseq - add "TrimGalore.modules = bioinfo/cutadapt-1.14-python-3.4.3" in [components] part of application.properties
- not working, waiting for the new pipeline developped by @celine.noirot with another workflow manager #56 (closed)
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illumina_matepair - bug #55 with cutadapt output
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ont_qc - add "Trim_porechop.modules = compiler/gcc-7.2.0,bioinfo/Porechop-0.2.1" in [components] part of application.properties
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radseq -
download_url -
download_symlink -
download_archive -
addrun -
addproject -
addfiles -
addanalysis -
phiX -
quickstart