... | @@ -39,7 +39,7 @@ nextflow run -profile genotoul <metagwgs-src>/main.nf \ |
... | @@ -39,7 +39,7 @@ nextflow run -profile genotoul <metagwgs-src>/main.nf \ |
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--accession2taxid '<bank>/subsampled_accesssion2taxid.tsv'\
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--accession2taxid '<bank>/subsampled_accesssion2taxid.tsv'\
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--eggnog_mapper_db_dir '<bank>/db_eggnog_mapper' \
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--eggnog_mapper_db_dir '<bank>/db_eggnog_mapper' \
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--diamond_bank '<bank>/diamond_nr_subselected_db.dmnd' \
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--diamond_bank '<bank>/diamond_nr_subselected_db.dmnd' \
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--gtdbtk_bank $gtdbtk_dir \
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--gtdbtk_bank '<bank>/GTDB-TKrelease207_v2' \
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--binning_cross_alignment "all" \
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--binning_cross_alignment "all" \
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-with-report -with-timeline -with-trace -with-dag
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-with-report -with-timeline -with-trace -with-dag
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```
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```
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... | | ... | |