... | ... | @@ -32,7 +32,7 @@ module load system/singularity-3.7.3 |
|
|
nextflow run -profile genotoul <metagwgs-src>/main.nf \
|
|
|
--type 'HIFI' \
|
|
|
--input "samplesheet.csv" \
|
|
|
-c '<bank>/hifi_data_workq.config' \
|
|
|
-c '/home/formation/work/datasetsMetaGWGS/hifi_data_workq.config' \
|
|
|
--skip_host_filter --skip_filtering \
|
|
|
--kaiju_db_dir '<bank>/kaijudb_refseq_2020-05-25' \
|
|
|
--taxdump '<bank>/new_taxdump' \
|
... | ... | |