... | ... | @@ -17,18 +17,18 @@ conda config --add channels conda-forge ? |
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**Create conda environment and export it in .yml file**
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```
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conda create -n env_noR -c conda-forge -c bioconda cutadapt sickle-trim bwa samtools bedtools spades megahit kaiju cd-hit krona subread fastqc prokka bcbio-gff multiqc
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conda create -n env_noR_aout -c conda-forge -c bioconda cutadapt sickle-trim bwa samtools bedtools spades megahit kaiju cd-hit krona subread fastqc prokka bcbio-gff multiqc
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conda activate env_noR
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conda activate env_noR_aout
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conda deactivate
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conda env export -n env_noR > env_noR.yml
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conda env export -n env_noR_aout > env_noR_aout.yml
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```
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**Create Singularity recipe**
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In Singularity_recipe_noR file write:
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In Singularity_recipe_noR_aout file write:
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```
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Bootstrap: docker
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... | ... | @@ -51,6 +51,6 @@ export PATH=/opt/conda/envs/env_noR_aout/bin:$PATH |
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**Build Singularity container**
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```
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sudo singularity build monimage_with_MultiQC_aout.img Singularity_recipe_noR
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sudo singularity build monimage_with_MultiQC_aout.img Singularity_recipe_noR_aout
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```
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