... | ... | @@ -15,7 +15,6 @@ conda config --add channels conda-forge |
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# Creation of conda environment
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conda create -n metagWGS_conda_env -c conda-forge -c bioconda cutadapt sickle-trim bwa samtools bedtools spades megahit kaiju cd-hit krona subread fastqc prokka bcbio-gff multiqc diamond pandas quast fraggenescan bowtie2 metabat2 busco=3.0.2 cat
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# Activation of conda environment
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source activate metagWGS_conda_env
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... | ... | @@ -33,9 +32,8 @@ cat metagWGS.yml | cut -d "=" -f 1,2 > metagWGS.yml |
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# Your metagWGS.yml file is ready !
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```
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* For the eggnogmapper.sif container:
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```
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# Creation of conda environment
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conda create -n metagWGS_python -c conda-forge -c bioconda python=3.7
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... | ... | |