... | ... | @@ -13,7 +13,7 @@ conda config --add channels conda-forge |
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* For the metagwgs.sif container:
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```
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# Creation of conda environment
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conda create -n metagWGS_conda_env -c conda-forge -c bioconda cutadapt sickle-trim bwa samtools bedtools spades megahit kaiju cd-hit krona subread fastqc prokka bcbio-gff multiqc diamond pandas quast fraggenescan bowtie2 metabat2 busco=3.0.2 cat
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conda create -n metagWGS_conda_env -c conda-forge -c bioconda bcbio-gff bwa-mem2 cd-hit cutadapt diamond fastqc genometools-genometools kaiju krona megahit minimap2 multiqc prokka quast samtools sickle-trim spades subread
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# Activation of conda environment
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source activate metagWGS_conda_env
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... | ... | |