... | ... | @@ -19,11 +19,6 @@ M-->|bwa index| N[Indexation contig file] |
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N-->|bwa mem| O[Aligned reads]
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O-->|Samtools view \nSamtools sort \nSamtools index| P[.bam file]
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P-->|featureCounts| Q[Quantification of gene]
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L-->|Only if other solution don't work \nfasta_extract.pl| R[Genes]
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R-->|bwa index| S[Indexation gene file]
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S-->|bwa mem| T[Aligned reads]
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T-->|Samtools view \nSamtools sort \nSamtools index| U[.bam file]
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U-->|Samtools idxstats| Q[Quantification]
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A-->|FastQC| W[Quality control]
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B-->|FastQC| X[Quality control]
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C-->|FastQC| Y[Quality control]
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... | ... | |