DSL2
DSL2 version
- pass to DSL2 to get 2 workflow (Short-read and HiFi)
- gene are named with feature (prot/rrna)
- aln2taxaffi.py refactored to use new_taxdump and prot.accession2taxid.FULL
- add header in diamond output and use it while parsing
- replace mosdepth by samtools coverage
- replace bedtools bamtofastq by samtools fastq
- check gff valididy after prokka
- simplify config files
- upadate documentation
- chunk assambly to reduce process time of filtering step