@@ -60,9 +60,9 @@ Two [Singularity](https://sylabs.io/docs/) containers are available making insta
The metagWGS documentation can be found in the following pages:
*[Installation](/docs/source/installation.md)
* The pipeline installation procedure. You can also see this documentation [here](https://genotoul-bioinfo.pages.mia.inra.fr/metagwgs/installation.html).
* The pipeline installation procedure. You can also see this documentation [here](https://genotoul-bioinfo.pages.mia.inra.fr/metagwgs/master/installation.html).
*[Usage](/docs/source/usage.md)
* An overview of how the pipeline works, how to run it and a description of all of the different command-line flags. You can also see this documentation [here](https://genotoul-bioinfo.pages.mia.inra.fr/metagwgs/usage.html).
* An overview of how the pipeline works, how to run it and a description of all of the different command-line flags. You can also see this documentation [here](https://genotoul-bioinfo.pages.mia.inra.fr/metagwgs/master/usage.html).
*[Output](/docs/source/output.md)
* An overview of the different output files and directories produced by the pipeline. You can also see this documentation [here](https://genotoul-bioinfo.pages.mia.inra.fr/metagwgs/output.html).
*[Use case](/docs/source/use_case.md)(WARNING: not up-to-date, needs to be updated)
