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genotoul-bioinfo
jvenn
Commits
7cf9a050
Commit
7cf9a050
authored
Jun 11, 2014
by
Jerome Mariette
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BMC_jvenn/bmc_jvenn.tex
View file @
7cf9a050
...
...
@@ -516,20 +516,22 @@ reviewers for their insightful and constructive comments.
&
input lists
&
&
&
&
&
\\
\hline
VENNTURE
\cite
{
Bronwen2012
}
&
6
&
Edwards
&
Stand-alone
&
No
&
Lists
&
Powerpoint
,
\\
&
&
&
&
&
&
Excel
, CSV
\\
\hline
Powerpoint
\\
&
&
&
&
&
&
and
Excel
\\
\hline
VennDiagram
\cite
{
RVennDiagram
}
&
5
&
Classical
&
R package
&
No
&
Lists
&
R object, TIFF
\\
\hline
&
R object
\\
&
&
&
&
&
&
and TIFF
\\
\hline
BioVenn
\cite
{
Hulsen2008
}
&
3
&
Classical
&
Web application
&
Yes
&
Lists
&
SVG
,
PNG
\\
\hline
Lists
&
SVG
and
PNG
\\
\hline
venny
\cite
{
venny
}
&
4
&
Classical
&
Web application
&
No
&
Lists
&
PNG
\\
\hline
Canvasxpress
\cite
{
canvasxpress
}
&
4
&
Classical
&
JavaScript library
&
No
&
Intersection counts
&
JavaScript canvas
\\
\hline
No
&
Intersection
&
JavaScript
\\
&
&
&
&
&
counts
&
canvas
\\
\hline
Google
&
3
&
Classical
&
JavaScript library
&
Yes
&
Lists
&
PNG
\\
...
...
@@ -538,8 +540,9 @@ reviewers for their insightful and constructive comments.
jvenn
&
6
&
Classical
&
Web application
&
No
&
Lists,
&
Interactive
\\
&
&
and Edwards
&
and JavaScript library
&
&
intersection counts
&
diagram,
\\
&
&
&
&
&
and count lists
&
PNG, CSV
&
&
and Edwards
&
and JavaScript
&
&
intersection
&
diagram,
\\
&
&
&
library
&
&
counts and
&
PNG and CSV
\\
&
&
&
&
&
count lists
&
\end{tabular}
\end{table}
...
...
BMC_jvenn/jvenn_coverletter_bis.tex
View file @
7cf9a050
...
...
@@ -115,7 +115,13 @@ not any of the other lists. How did the papers (10,11) use it and why couldn't
they use another library? Perhaps a brief mention of other ways to
look/visualize this data might be worth it:
}
The organisation of the manuscript has been modified and several paragraph have
been rewritten.
The two papers citing jvenn used it to built a publishable diagram. They used
jvenn because it is the only Web application available allowing users to provide
5 lists. To produce such a diagram they could have use VENNTURE as well, but
this application is only available under MS-Windows and only produce Powerpoint
outputs under the Edwards-Venn layout.
\textbf
{
-- Reviewer 2 --
}
...
...
@@ -158,10 +164,8 @@ sets of items. A clear statement about the novel contributions (with
respect to the library) will strengthen the paper.
}
jvenn is only using the venny algorithm to compute the lists intersection.
The sentence ``jvenn intersection computing algorithm is based on venny.
The algorithm has been wrapped in a jQuery plug-in,
extended with new features presented hereunder and the ability to use up to six
lists.'' has been added as introduction to the Implementation section.
The sentence ``jvenn intersection computing algorithm is based on venny.'' has
been added to the Implementation section.
\textbf
{
4. The authors should describe the three different data formats.
...
...
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