Merge branch 'develop' of forgemia.inra.fr:bios4biol/workflows into develop

Snakemake/IMAGE_calling/README.md

Snakemake/IMAGE_calling/SLURM.sh

Snakemake/IMAGE_calling/Snakefile

Snakemake/IMAGE_calling/config.yaml

...ake/IMAGE_calling/data/known_variants/Bos_taurus_6.vcf.gz

...IMAGE_calling/data/known_variants/Bos_taurus_6.vcf.gz.tbi

...make/IMAGE_calling/data/reads/SRR1205973_extract_R1.fq.gz

...make/IMAGE_calling/data/reads/SRR1205973_extract_R2.fq.gz

Snakemake/IMAGE_calling/data/reads/test_input_data.csv

...GE_calling/data/ref/Bos_taurus.UMD3.1.dna.toplevel.6.dict

...MAGE_calling/data/ref/Bos_taurus.UMD3.1.dna.toplevel.6.fa

..._calling/data/ref/Bos_taurus.UMD3.1.dna.toplevel.6.fa.amb

..._calling/data/ref/Bos_taurus.UMD3.1.dna.toplevel.6.fa.ann

..._calling/data/ref/Bos_taurus.UMD3.1.dna.toplevel.6.fa.bwt

..._calling/data/ref/Bos_taurus.UMD3.1.dna.toplevel.6.fa.fai

..._calling/data/ref/Bos_taurus.UMD3.1.dna.toplevel.6.fa.pac

...E_calling/data/ref/Bos_taurus.UMD3.1.dna.toplevel.6.fa.sa

Snakemake/IMAGE_calling/img/IMAGE_calling_workflow.png

Snakemake/IMAGE_calling/resources_SLURM.yaml

Snakemake/IMAGE_calling/rules/bcftools_stats.rules