Snakemake/1000RNASeq_chicken/ASE/README.md

Snakemake/1000RNASeq_chicken/ASE/SLURM.sh

Snakemake/1000RNASeq_chicken/ASE/Snakefile

Snakemake/1000RNASeq_chicken/ASE/config_ase.yaml.example

Snakemake/1000RNASeq_chicken/ASE/data/population.tsv.example

Snakemake/1000RNASeq_chicken/ASE/data/reference.dict

Snakemake/1000RNASeq_chicken/ASE/data/reference.fa

Snakemake/1000RNASeq_chicken/ASE/data/reference.fa.fai

Snakemake/1000RNASeq_chicken/ASE/data/reference.gtf

Snakemake/1000RNASeq_chicken/ASE/data/samplePE_R1.fastq.gz

Snakemake/1000RNASeq_chicken/ASE/data/samplePE_R2.fastq.gz

Snakemake/1000RNASeq_chicken/ASE/data/sampleSE.fastq.gz

Snakemake/1000RNASeq_chicken/ASE/data/variants.vcf.gz

Snakemake/1000RNASeq_chicken/ASE/data/variants.vcf.gz.tbi

Snakemake/1000RNASeq_chicken/ASE/resources_SLURM.yaml

Snakemake/1000RNASeq_chicken/ASE/rules/ASE_counter.smk

Snakemake/1000RNASeq_chicken/ASE/rules/TrimGalore.smk

Snakemake/1000RNASeq_chicken/ASE/rules/alignmentProcess.smk

Snakemake/1000RNASeq_chicken/ASE/rules/basics.smk

Snakemake/1000RNASeq_chicken/ASE/rules/genomeMasking.smk