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Commit 8e71a481 authored by mariabernard's avatar mariabernard
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IMAGE_vqsr: rename intersect rules

parent 94b50f7c
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......@@ -18,7 +18,7 @@ def get_ordered_input_uniq(wildcards):
return input
rule uniq :
rule uniq_variants :
input :
get_ordered_input_uniq
output :
......@@ -32,7 +32,7 @@ rule uniq :
{config[bin][bgzip]} -c {output.vcf} > {output.gzip}
"""
rule concat_uniq:
rule concat_uniq_variants:
input :
expand("results/intersect/uniq_{caller}_variants.vcf.gz.tbi", caller=["freebayes","mpileup","gatk"]),
vcfs=expand("results/intersect/uniq_{caller}_variants.vcf.gz", caller=["freebayes","mpileup","gatk"]),
......@@ -47,7 +47,7 @@ rule concat_uniq:
{config[bin][bcftools]} concat -a {input.vcfs} | {config[bin][bcftools]} sort - -m {params.mem} -o {output} -O z
"""
rule common_variant:
rule common_variants:
input:
config["GATK_variants"],
config["Freebayes_variants"],
......
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