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Commit 7803ae62 authored by Maria Bernard's avatar Maria Bernard
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Snakemake 1000RNASeq ASE : update dependency version

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# bin_dir is a directory containing software binary used in this pipeline:
# trimgalore (version 0.4.5 with cutadapt (version 1.14))
# trimgalore (version 0.6.5 with cutadapt (version 2.1))
# tabix and bgzip (version 0.2.5)
# STAR (version 2.6.0c )
# GenomeAnalysisTK.jar (version 3.8.1)
# bedtools (version 2.27.1)
# picard.jar (version 2.1.1)
# samtools (version 1.8)
# STAR (version 2.6.0c )
# GenomeAnalysisTK.jar (version 4.1.2.0)
# samtools (version 1.9)
# md5sum
# phASER (version downloaded 07-06-2019 ) with :
# phASER (version downloaded 23-03-2020 ) with :
# python2.7 and associated Scipy and Numpy library
# bgzip (version 0.2.5, cf tabix)
# bcftools (version 1.8)
# bcftools (version 1.9)
# if not bin_dir, the binary need to be available in the PATH
bin_dir : bin
......
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