rename workflow IMAGE in IMAGE_calling
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- Snakemake/IMAGE_calling/README.pdf 0 additions, 0 deletionsSnakemake/IMAGE_calling/README.pdf
- Snakemake/IMAGE_calling/SGE.sh 15 additions, 0 deletionsSnakemake/IMAGE_calling/SGE.sh
- Snakemake/IMAGE_calling/SLURM.sh 22 additions, 0 deletionsSnakemake/IMAGE_calling/SLURM.sh
- Snakemake/IMAGE_calling/SLURM_chickenFR.sh 21 additions, 0 deletionsSnakemake/IMAGE_calling/SLURM_chickenFR.sh
- Snakemake/IMAGE_calling/Snakefile 171 additions, 0 deletionsSnakemake/IMAGE_calling/Snakefile
- Snakemake/IMAGE_calling/config.yaml 71 additions, 0 deletionsSnakemake/IMAGE_calling/config.yaml
- Snakemake/IMAGE_calling/config_chickenFR.yaml 134 additions, 0 deletionsSnakemake/IMAGE_calling/config_chickenFR.yaml
- Snakemake/IMAGE_calling/data/adapter/adapter.fasta 2 additions, 0 deletionsSnakemake/IMAGE_calling/data/adapter/adapter.fasta
- Snakemake/IMAGE_calling/data/known_variants/variants_freebayes.vcf.gz 0 additions, 0 deletions...AGE_calling/data/known_variants/variants_freebayes.vcf.gz
- Snakemake/IMAGE_calling/data/known_variants/variants_freebayes.vcf.gz.tbi 0 additions, 0 deletions...calling/data/known_variants/variants_freebayes.vcf.gz.tbi
- Snakemake/IMAGE_calling/data/reads/Sample_A.L001.R1.fastq.gz 1 addition, 0 deletionsSnakemake/IMAGE_calling/data/reads/Sample_A.L001.R1.fastq.gz
- Snakemake/IMAGE_calling/data/reads/Sample_A.L001.R2.fastq.gz 1 addition, 0 deletionsSnakemake/IMAGE_calling/data/reads/Sample_A.L001.R2.fastq.gz
- Snakemake/IMAGE_calling/data/reads/Sample_A.L002.R1.fastq.gz 1 addition, 0 deletionsSnakemake/IMAGE_calling/data/reads/Sample_A.L002.R1.fastq.gz
- Snakemake/IMAGE_calling/data/reads/Sample_A.L002.R2.fastq.gz 1 addition, 0 deletionsSnakemake/IMAGE_calling/data/reads/Sample_A.L002.R2.fastq.gz
- Snakemake/IMAGE_calling/data/reads/chicken_FR_1ech.csv 3 additions, 0 deletionsSnakemake/IMAGE_calling/data/reads/chicken_FR_1ech.csv
- Snakemake/IMAGE_calling/data/reads/test_input_data.csv 3 additions, 0 deletionsSnakemake/IMAGE_calling/data/reads/test_input_data.csv
- Snakemake/IMAGE_calling/data/ref/genome.chr21.dict 2 additions, 0 deletionsSnakemake/IMAGE_calling/data/ref/genome.chr21.dict
- Snakemake/IMAGE_calling/data/ref/genome.chr21.fa 778501 additions, 0 deletionsSnakemake/IMAGE_calling/data/ref/genome.chr21.fa
- Snakemake/IMAGE_calling/data/ref/genome.chr21.fa.amb 53 additions, 0 deletionsSnakemake/IMAGE_calling/data/ref/genome.chr21.fa.amb
- Snakemake/IMAGE_calling/data/ref/genome.chr21.fa.ann 3 additions, 0 deletionsSnakemake/IMAGE_calling/data/ref/genome.chr21.fa.ann
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