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- Snakemake/1000RNASeq_chicken/ASE/Snakefile 3 additions, 2 deletionsSnakemake/1000RNASeq_chicken/ASE/Snakefile
- Snakemake/1000RNASeq_chicken/ASE/config_ase.yaml.example 0 additions, 6 deletionsSnakemake/1000RNASeq_chicken/ASE/config_ase.yaml.example
- Snakemake/1000RNASeq_chicken/ASE/resources_SLURM.yaml 17 additions, 7 deletionsSnakemake/1000RNASeq_chicken/ASE/resources_SLURM.yaml
- Snakemake/1000RNASeq_chicken/ASE/rules/ASE_counter.smk 13 additions, 12 deletionsSnakemake/1000RNASeq_chicken/ASE/rules/ASE_counter.smk
- Snakemake/1000RNASeq_chicken/ASE/rules/basics.smk 1 addition, 1 deletionSnakemake/1000RNASeq_chicken/ASE/rules/basics.smk
- Snakemake/1000RNASeq_chicken/ASE/rules/variantFiltration.smk 112 additions, 11 deletionsSnakemake/1000RNASeq_chicken/ASE/rules/variantFiltration.smk
- Snakemake/1000RNASeq_chicken/ASE/script/variantFiltration.py 293 additions, 0 deletionsSnakemake/1000RNASeq_chicken/ASE/script/variantFiltration.py
- Snakemake/1000RNASeq_chicken/ASE/script/vcf_filter_and_annot.py 48 additions, 21 deletions...ake/1000RNASeq_chicken/ASE/script/vcf_filter_and_annot.py
- Snakemake/1000RNASeq_chicken/calling/SLURM.sh 3 additions, 3 deletionsSnakemake/1000RNASeq_chicken/calling/SLURM.sh
- Snakemake/1000RNASeq_chicken/calling/resources_calling_SLURM.yaml 1 addition, 1 deletion...e/1000RNASeq_chicken/calling/resources_calling_SLURM.yaml
- Snakemake/RNAseqVariantCalling/How_to_install.md 34 additions, 0 deletionsSnakemake/RNAseqVariantCalling/How_to_install.md
- Snakemake/RNAseqVariantCalling/README.md 155 additions, 87 deletionsSnakemake/RNAseqVariantCalling/README.md
- Snakemake/RNAseqVariantCalling/SLURM.sh 54 additions, 0 deletionsSnakemake/RNAseqVariantCalling/SLURM.sh
- Snakemake/RNAseqVariantCalling/Singularity_SLURM.sh 59 additions, 0 deletionsSnakemake/RNAseqVariantCalling/Singularity_SLURM.sh
- Snakemake/RNAseqVariantCalling/Snakefile_calling 194 additions, 181 deletionsSnakemake/RNAseqVariantCalling/Snakefile_calling
- Snakemake/RNAseqVariantCalling/example/config_calling.yaml 29 additions, 4 deletionsSnakemake/RNAseqVariantCalling/example/config_calling.yaml
- Snakemake/RNAseqVariantCalling/resources_SLURM.yaml 1 addition, 1 deletionSnakemake/RNAseqVariantCalling/resources_SLURM.yaml
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