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07679bc2

Commit 07679bc2 authored 6 years ago by mariabernard

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IMAGE vqsr: add bcftools stat and add logs directories

parent cf1fea3e

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Changes 8

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Snakemake/IMAGE_vqsr/Snakefile 9 additions, 3 deletions

Snakemake/IMAGE_vqsr/Snakefile
Snakemake/IMAGE_vqsr/resources_SLURM.yaml 3 additions, 0 deletions

Snakemake/IMAGE_vqsr/resources_SLURM.yaml
Snakemake/IMAGE_vqsr/rules/basics.smk 16 additions, 1 deletion

Snakemake/IMAGE_vqsr/rules/basics.smk
Snakemake/IMAGE_vqsr/rules/genoFilter.smk 2 additions, 2 deletions

Snakemake/IMAGE_vqsr/rules/genoFilter.smk
Snakemake/IMAGE_vqsr/rules/hardfiltering.smk 2 additions, 2 deletions

Snakemake/IMAGE_vqsr/rules/hardfiltering.smk
Snakemake/IMAGE_vqsr/rules/intersect_vcf.smk 3 additions, 3 deletions

Snakemake/IMAGE_vqsr/rules/intersect_vcf.smk
Snakemake/IMAGE_vqsr/rules/split_vcf.smk 1 addition, 1 deletion

Snakemake/IMAGE_vqsr/rules/split_vcf.smk
Snakemake/IMAGE_vqsr/rules/vqsr.smk 4 additions, 3 deletions

Snakemake/IMAGE_vqsr/rules/vqsr.smk

with 40 additions and 15 deletions

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