Snakemake : (re) add rules (055a8c60) · Commits · Cervin Guyomar / workflows · GitLab

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055a8c60

Commit 055a8c60 authored 4 years ago by mariabernard

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Snakemake : (re) add rules

parent 03b2e61c

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Snakemake/1000GB/rules/BamStats.rules 43 additions, 0 deletions

Snakemake/1000GB/rules/BamStats.rules
Snakemake/1000GB/rules/bwa_mem_pe.rules 156 additions, 0 deletions

Snakemake/1000GB/rules/bwa_mem_pe.rules
Snakemake/1000GB/rules/bwa_mem_se.rules 63 additions, 0 deletions

Snakemake/1000GB/rules/bwa_mem_se.rules
Snakemake/1000GB/rules/fastqc.rules 36 additions, 0 deletions

Snakemake/1000GB/rules/fastqc.rules
Snakemake/1000GB/rules/haplotypecaller.rules 24 additions, 0 deletions

Snakemake/1000GB/rules/haplotypecaller.rules
Snakemake/1000GB/rules/markduplicates.rules 41 additions, 0 deletions

Snakemake/1000GB/rules/markduplicates.rules
Snakemake/1000GB/rules/md5sum.rules 60 additions, 0 deletions

Snakemake/1000GB/rules/md5sum.rules
Snakemake/1000GB/rules/md5sum_samples.rules 132 additions, 0 deletions

Snakemake/1000GB/rules/md5sum_samples.rules
Snakemake/1000GB/rules/recalibration.rules 75 additions, 0 deletions

Snakemake/1000GB/rules/recalibration.rules
Snakemake/1000GB/rules/trim_pe.rules 60 additions, 0 deletions

Snakemake/1000GB/rules/trim_pe.rules
Snakemake/1000GB/rules/trim_se.rules 56 additions, 0 deletions

Snakemake/1000GB/rules/trim_se.rules

with 746 additions and 0 deletions

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