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resources_calling_SLURM.yaml 1.12 KiB
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__default__ :
    mem : "8G"
    cpu : 8
    time : "24:00:00"

convertPhred:
    cpu : 1

trim_se :
    cpu : 1

trim_pe :
    cpu : 1
    
log_merge_trim:
    cpu : 1
    time : "1:00:00"
    
star_index_pass1 :
    mem : "18G"

star_aln_pass1 :
    mem : "12G"
    
star_index_pass2 :
    mem : "18G"

star_aln_pass2 :
    mem : "12G"

log_merge_STAR:
    cpu : 1
    time : "1:00:00"

clean_SAM :
    cpu : 1
    mem: "12G"
    
add_RG :
    cpu : 1
    mem: "12G"
    
merge_bam_star2 :
    cpu : 1
    
remove_multimap :
    cpu : 1
    
rsem_count:
    mem : "10G"

merge_rsem :
    cpu : 1
    time : "1:00:00"

merge_bam :
    cpu : 1
    
markdup :
    cpu : 1
    mem: "15G"
    
SplitNCigarReads :
    cpu : 1
    mem : "30G"
    
RealignerTargetCreator :
    cpu : 1
    mem : "30G"

IndelRealigner :
    cpu : 1
    mem : "30G"

BaseRecalibrator :
    cpu : 1
    mem : "30G"

PrintReads :
    cpu: 1
    mem : "30G"

individual_gVCF_HaplotypeCaller :
    cpu: 1
    mem : "30G"
    time : "72:00:00"
    
genotypeGVCF :
    cpu: 1
    mem : "60G"
    time : "96:00:00"

selectVariant :
    cpu : 1
    mem : "20G"