i2MassChroQ 
============

Copyright : © 2015-2024, Olivier Langella, Filippo Rusconi
i2MassChroQ is distributed under the terms of the GNU General Public License (available in the COPYING file)

i2MassChroQ (identification & inference -- mass chromatogram quantification) is
the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and
integration of the MassChroQ and MSstats modules, i2MassChroQ features a
full-fledged quantitative proteomics solution.

Home page
---------

The home page of the project is located at
http://pappso.inrae.fr/en/bioinfo/i2masschroq/.

User manual
-----------

The user documentation is available either in the shipped package or from the
following pages:

* HTML format: http://pappso.inrae.fr/en/bioinfo/i2masschroq/documentation/html/
* PDF format: http://pappso.inrae.fr/en/bioinfo/i2masschroq/documentation/i2MassChroQ-doc.pdf

Pre-compiled binaries
---------------------

The software is packaged for MS-Windows and for GNU/Linux (Debian/Ubuntu):

* https://forgemia.inra.fr/pappso/i2masschroq/-/releases
* http://pappso.inrae.fr/en/bioinfo/i2masschroq/download/ (instructions for
  Debian/Ubuntu)

Contributing code to i2MassChroQ
--------------------------------

* Contributions to i2MassChroQ are welcome. We accept pull requests.
* The coding style should replicate that of the code being modified.