Asm4pg is an automatic and reproducible genome assembly workflow for pangenomic applications using PacBio HiFi data.
Asm4pg Requirements
- snakemake >= 6.5.1
- singularity
The workflow does not work with HPC that does not allow a job to run other jobs.
Tutorials
The three assembly modes from hifiasm are available.
Outputs
Optional Data Preparation
If your data is in a tarball
Known errors
You may run into these errors