Skip to content
Snippets Groups Projects

Update README.md

Merged Anne Goelzer requested to merge anne.goelzer-main-patch-57518 into main
1 file
+ 8
3
Compare changes
  • Side-by-side
  • Inline
+ 8
3
# RBA plant cell model
## Description
This project contains the RBA leaf cell model, that are encoded in the XML format compatible with the software RBApy.
This project contains
- RBA-xml files: the RBA leaf cell model of A. thaliana that is encoded in the XML format compatible with the software RBApy.
For further information on RBA or RBApy, please visit https://rba.inrae.fr/.
Be careful: at this stage, RBApy is not able to support simulation for eukaryotic cells (Goelzer et al. BioRXiv 2019; 750182).
- RBA_codes: the Matlab simulation codes for the RBA leaf model (Requires Matlab 2018 and Cplex 12.8).
- Farquhar_arabette: the Farqhuar model and simulations for A. thaliana
## Installation
Clone the repository. No further installation is needed.
Clone the repository.
Install Cplex 12.6 or Cplex 12.8 if you want to run the model in Matlab.
Make sure that Cplex can be accessed by Matlab
## Authors and acknowledgment
The RBA leaf cell model, the simulation code and the Farquhar model of Arabidopsis thaliana are developed by Anne Goelzer.
The RBA leaf cell model, the RBA simulation code and the Farquhar model of Arabidopsis thaliana are developed by Anne Goelzer.
## License
This project is under the licence CC-BY-NC
Loading