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Commit 831b5cde authored by Alexis Mergez's avatar Alexis Mergez
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Moved PyTools to Pan1c-apps

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Bootstrap: docker
From: ghcr.io/mamba-org/micromamba:latest
Stage: build
%environment
export MAMBA_DOCKERFILE_ACTIVATE=1
%post
export MAMBA_DOCKERFILE_ACTIVATE=1
apt-get update && apt-get upgrade -y
# Creating base environment with micromamba
mkdir /apps
micromamba create -y -p /apps/base -c conda-forge -c bioconda \
python=3.10.* \
pandas \
numpy \
biopython \
ragtag \
matplotlib \
seaborn
%runscript
exec micromamba run -p /apps/base "$@"
%labels
Author alexis.mergez@inrae.fr
Version VERSION_NUMBER
python.Version 3.10.*
%help
This container wraps a light python environment including some tools using in genomics:
- RagTag
- Biopython
- pandas
- numpy
- matplotlib
- seaborn
To use the image, run : 'apptainer run <image path>.sif [command]'.
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