v1.12a

Changelogs :

• Moved general purpose rules to rules/tools.smk
• Added report creation options
• Added logs for several rules (in logs/)
• Added SyRI on chrInputs in addition to input assemblies
• Renamed chromosomes to prevent SyRI from erroring out when unable to match chromosomes
• Added high priority to the main rules of the workflow
• Reworked 1D viz for the report
• Removed haplotypes grouping by sample name in Panacus
• Moved compression steps to a dedicated rule