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Created with Raphaël 2.2.027Jul25Jun202May3Apr26Mar2019513Feb23Dec1922Nov2127Sep1125Jul523Jun2016151276432131May29282423171611106Apr21Mar23Feb217Jan53230Dec29282221191222Nov18159318Oct1113Sep820Jun1331May29Apr624Mar1111Feb1025Jan22201987418Nov76329Oct282120917Sep111019Aug1816Jul30Jun221623Mar1026Feb9Dec112Nov6530Oct2928241410816Sep1210987428Aug272676130Jul2928161526Jun25419May1614131225Apr232114119432131Mar2824Feb21Nov2016Oct15111025Sep1613429Aug2623222087130Jul2919210Jun54321May181712Apr11965330Mar2924Jan18Reorganization of include files. Added missing license.docker masterdocker masterVersion bump.New features, bugfixes, itś a big mess, but it works.WIP.Late commit with fixes and updates. See the diff…Closes #5.Closes #7.added ignore file to clean up the package1st version of SMT/R. Had to rename MESSAGE into SPELL_STRING because of conflict.Embryo of an R package for the mapping tools.Working implementation of using joint meioses wherever applicable.First implementation of spell-map.Generalized product seems to be working now to compute factors with and without gametes.Merge branch 'master' of git+ssh://scm.mulcyber.toulouse.inra.fr//var/lib/gforge/chroot/scmrepos/git/spel/spelMaking it compile with newer compilers…WIP.Added missing file…added debug messagevarious small fixesadded debug messageessais_calcul_g…essais_calcul_geno_matrix_foireuxvarious small fixesfoirique.joint locus block reduction is BROKEN.Fixed some race conditions. Fixed bug when using locus not in test positions by snapping the locus to the test positions.Reporting WIP.Generating reports in XLSX format. Much redesign to do.Started implementing excel output.Now fixing rank before reporting. Added missing files.Fixed the model checks.Compiles with clang. executes 10% faster with clang.Removed dependency on x2c.Switched to eigen-3.3 and fixed behaviour when with_traits is empty.Added dependencies on spell-* binaries.Fixed a dependency in user_manual's makefile.Commit before 0.2 tag.Tweaked the user manual a bit.longer foreword + typostypos + added logosmore outputssplit main file, change typewriter police, round phen values