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Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
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QTL
spell-qtl
Commits
12aa17f3
Commit
12aa17f3
authored
Jun 02, 2017
by
Damien Leroux
Browse files
Work around GNU Make's whims.
parent
d7586143
Changes
1
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Inline
Side-by-side
doc/user_manual/makefile
View file @
12aa17f3
...
...
@@ -6,7 +6,7 @@ EXAMPLE_DIR = $(SRCDIR)/examples/three_parents_F2
all
:
user_manual.pdf
user_manual.pdf
:
spell-pedigree.tex spell-marker.tex spell-qtl.tex spell-qtl-examples.tex version.tex user_manual.tex images/Spell-pipeline2.svg inputs outputs
user_manual.pdf
:
spell-pedigree.tex spell-marker.tex spell-qtl.tex spell-qtl-examples.tex version.tex user_manual.tex images/Spell-pipeline2.svg
.
inputs
.
outputs
pdflatex
--shell-escape
user_manual.tex
&&
pdflatex
--shell-escape
user_manual.tex
>
/dev/null
version.tex
:
...
...
@@ -36,8 +36,8 @@ input_files/example1.map input_files/example1_F2.phen input_files/example1_F2.ge
mkdir
-p
input_files
awk
-v
len
=
69
'{ if (length($$0) > len) print substr($$0, 1, len-3) "..."; else print; }'
$<
>
$@
inputs
:
input_files/example1.map input_files/example1_F2.phen input_files/example1_F2.gen input_files/example1.ped
.
inputs
:
input_files/example1.map input_files/example1_F2.phen input_files/example1_F2.gen input_files/example1.ped
touch
$@
my_directory/my_name.cache/my_name.spell-pedigree.data
:
$(EXAMPLE_DIR)/example1.ped
$(BINDIR)
/spell-pedigree
-wd
my_directory
-n
my_name
-p
$<
...
...
@@ -51,7 +51,8 @@ my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv: my_directory/my_name.
my_directory/my_name.report/t1/t1_report.txt
:
my_directory/my_name.cache/my_name.spell-marker.data $(EXAMPLE_DIR)/example1_F2.phen $(EXAMPLE_DIR)/example1_F2C.phen $(EXAMPLE_DIR)/example1.map
$(BINDIR)
/spell-qtl
-wd
my_directory
-n
my_name
-P
auto
-p
F2
$(EXAMPLE_DIR)
/example1_F2.phen
-p
F2C
$(EXAMPLE_DIR)
/example1_F2C.phen
-gm
$(EXAMPLE_DIR)
/example1.map
outputs
:
my_directory/my_name.report/t1/t1_report.txt my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv
.outputs
:
my_directory/my_name.report/t1/t1_report.txt my_directory/my_name.n-point/ch1/F2/my_name.ch1.F2.0.csv
touch
$@
clean
:
rm
-f
*
.aux
*
.log
*
.pdf
*
.toc
*
.out
*
.lol
...
...
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