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This section will display, after selection of your genotypes of interest and location in the genome, a table with all the SNPs (Single Nucleotide Polymorphisms) and indels (small insertions or deletions) present in your selection.
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It also gives informations about the potential effect and impact of these variations on the resulting protein.
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This section will display, after selection of your genotypes of interest and location in the genome, a table with all the SNPs (Single Nucleotide Polymorphisms) and indels (small insertions or deletions) present in your selection. It also gives informations about the potential effect and impact of these variations on the resulting protein.
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./. = Missing data
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./. = Missing data
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0/0 = No variation comparing to reference genome
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0/1 = Heterozygous variant for the 1rst ALT allele
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0/2 = Heterozygous variant for the 2nd ALT allele, etc.
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0/1 = Heterozygous variant for the 1rst ALT allele 0/2 = Heterozygous variant for the 2nd ALT allele, etc.
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1/1 : Homozygous variant for the 1rst ALT allele
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2/2 : Homozygous variant for the 2nd ALT allele, etc.
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1/1 : Homozygous variant for the 1rst ALT allele 2/2 : Homozygous variant for the 2nd ALT allele, etc.
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1/2 : Heterozygous variant containing the 1rst ALT and the 2nd ALT allele
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2/3 : the 2nd and the 3rd ALT allele, etc. |
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\ No newline at end of file |
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1/2 : Heterozygous variant containing the 1rst ALT and the 2nd ALT allele 2/3 : the 2nd and the 3rd ALT allele, etc. |
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\ No newline at end of file |