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After selection of your genomic location and genotype(s) of interest, this section will display a table containing the SNPs (Single Nucleotide Polymorphisms) and indels (small insertions or deletions) present in your selection. It also gives informations about the potential effect and impact of these variations on the resulting protein.
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When the column GENE dispays the name of the gene associated with "_t00n", there are several alternative transcripts associated with the variant (n standing for the number of alternative transcripts). In this case, one same variant is displayed on n lines.
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The QD column shows the QualByDepth score given by GATK software, i.e. the QUAL score normalized by allele depth (AD) for a variant. For further information, check this page :
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https://gatk.broadinstitute.org/hc/en-us/articles/360037592191-QualByDepth
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A "md" in EFFECT, IMPACT or AA columns stands for "missing data".
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./. = Missing data
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0/0 = No variation comparing to reference genome
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