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- SOR (StrandOddsRatio) > 3.0
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- MQ (RMSMappingQuality) < 40.0
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For further information on criteria, take a look on the page below :
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https://gatk.broadinstitute.org/hc/en-us/articles/360035890471-Hard-filtering-germline-short-variants
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The phylogenic tree was generated using SNPhylo.20181005, with a bootstrap confidence value of 100, and using Pathenocissus as outgroup. |
