@@ -6,6 +6,7 @@ Then variants were filtered again based on certain criteria. Were removed from f
- FS (FisherStrand) > 60.0
- SOR (StrandOddsRatio) > 3.0
- MQ (RMSMappingQuality) < 40.0
-
For further information on criteria, take a look at this page : https://gatk.broadinstitute.org/hc/en-us/articles/360035890471-Hard-filtering-germline-short-variants
The phylogenic tree was generated using SNPhylo.20181005, with a bootstrap confidence value of 100, and Pathenocissus as outgroup.