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  • OmnicrobeOmnicrobe
  • text-mining-workflow
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  • #25
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Issue created Mar 11, 2021 by Mouhamadou Ba@mandiaybaOwner

gerer la rule create_dummy_bionlp_st_dir

trouver une solution pour la rule create_dummy_bionlp_st_dir qui allonge le temps de calcul du pipeline process_PubMed_corpus.snakefile

https://forgemia.inra.fr/migale/florilege-text-mining-workflow/-/blob/master/process_PubMed_corpus.snakefile#L28

solutions possibles :

  • déplacer le mkdir dans l'exécution de la règle run_pubmed_entities.
  • Faire tous les mkdir dans un seul script avec une boucle
  • sortir le module read de entities.plan
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