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La modification de métabolite dans un projet de fonctionne pas

Je voulais modifier le chebi (18320) du 1,4-dithiothreitol dans recon3D réseau 5527 dans le projet SpecMet (je t'y ai donné accès).

Ça écrase les Ids de la molécule et ça ne les remplace pas. Pas d'erreur en console mais dans le PHP.

VM-METEXPLORE-TEST

error.log [Tue Dec 11 08:32:15.106152 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.106338 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.106406 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.106421 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.106433 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.108192 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.108247 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.108286 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.108298 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.108309 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.108530 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 778, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.108562 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 783, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.108623 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): Permission denied in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 801, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.111964 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//History/5527/metabolites/history_9937334.tsv): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 712, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.111989 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 713, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.112001 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 714, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.112012 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 715, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.112033 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 720, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.114023 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 727, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.118028 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Notice: Undefined variable: qty in /var/www/metexplore-master/resources/src/php/modifNetwork/UpdateMetabolite.php on line 72, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.119733 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.119799 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.119848 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.119865 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.119880 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.121558 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.121616 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.121664 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.121681 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.121695 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.123297 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are required to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.123349 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.123407 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.123423 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/ [Tue Dec 11 08:32:15.123437 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/

VM-METEXPLORE-PROD

ssl_error-log [Tue Dec 11 08:35:14.358634 2018] [:error] [pid 368] [client 147.99.104.40:50103] SELECT DISTINCT idReaction, reversible FROM ReactionInBioSource WHERE ReactionInBioSource.idBioSource=5527, referer: https://metexplore.toulouse.inra.fr/metexplore2/ [Tue Dec 11 08:35:16.466681 2018] [:error] [pid 1809] [client 130.223.194.144:49560] PHP Notice: Use of undefined constant localhost - assumed 'localhost' in /var/www/joomla/tmp/sourcerer_php_e43a0d0151e478e19d0f9f57245cca66 on line 10 [Tue Dec 11 08:35:19.396824 2018] [:error] [pid 1878] [client 130.223.194.144:49561] PHP Notice: Use of undefined constant localhost - assumed 'localhost' in /var/www/joomla/tmp/sourcerer_php_e43a0d0151e478e19d0f9f57245cca66 on line 10, referer: http://www.metexplore.fr/ [Tue Dec 11 08:35:23.392356 2018] [:error] [pid 3163] [client 130.223.194.144:49567] SELECT DISTINCT idReaction, reversible FROM ReactionInBioSource WHERE ReactionInBioSource.idBioSource=3223, referer: https://metexplore.toulouse.inra.fr/metexplore2/ [Tue Dec 11 08:35:28.601474 2018] [:error] [pid 23300] [client 107.178.194.39:36530] PHP Notice: Use of undefined constant localhost - assumed 'localhost' in /var/www/joomla/tmp/sourcerer_php_e43a0d0151e478e19d0f9f57245cca66 on line 10 [Tue Dec 11 08:35:40.021161 2018] [:error] [pid 3163] [client 130.223.194.144:49579] SELECT DISTINCT idReaction, reversible FROM ReactionInBioSource WHERE ReactionInBioSource.idBioSource=3223, referer: https://metexplore.toulouse.inra.fr/metexplore2/ [Tue Dec 11 08:35:57.249758 2018] [:error] [pid 3205] [client 147.99.104.40:50175] PHP Notice: Undefined variable: qty in /var/www/metexplore2.18.13/resources/src/php/modifNetwork/UpdateMetabolite.php on line 72, referer: https://metexplore.toulouse.inra.fr/metexplore2/