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# Overview
NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on ... The software package is based on the [jflow](http://jflow.toulouse.inra.fr/app/index.html) workflow engine and the [biomart](http://www.biomart.org/) query API.
![Architecture](/uploads/8763c686ff39319d1116e50e44db2428/Architecture.png)
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![Architecture](/uploads/8763c686ff39319d1116e50e44db2428/Architecture.png)
# Supported applications
* RNA-seq denovo - A workflow specialized to analyse data produced by a RNA-seq protocole on species without any reference genomes.
* sRNA-seq - A workflow specialized to analyse data produced by a sRNA-seq protocole.
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