Issues · genotoul-bioinfo / ng6 · GitLab

Infos générales sur la page purge

#3 · created Mar 27, 2018 by Celine Noirot V3.1 - Purge Apr 18, 2018 Enhancement
- CLOSED
- 1
updated Jun 19, 2018
Update of the picardtools

#6 · created Apr 09, 2018 by Audrey Gibert V3.2 - Slurm Apr 27, 2018 Enhancement
- CLOSED
- 2
updated Aug 02, 2018
Update of Samtools

#7 · created Apr 09, 2018 by Maxime Manno V3.2 - Slurm Apr 30, 2018 Enhancement
- CLOSED
- 0
updated Aug 01, 2018
Regenerate a password for users added by the project manager

#9 · created Apr 19, 2018 by Audrey Gibert Enhancement New feature Todo
- CLOSED
- 2
updated Jan 22, 2020
flag project which all runs and analyses are purgeable

#13 · created Jun 19, 2018 by Claire Kuchly V3.1 - Purge Jun 30, 2018 Enhancement
- CLOSED
- 1
- 0
updated Jul 18, 2018
[purge] : for projet who has no administror : mail sent to all users project

#14 · created Jun 19, 2018 by Claire Kuchly V3.1 - Purge Jun 30, 2018 Enhancement
- CLOSED
- 1
updated Aug 28, 2018
generate script to compute storage size for extention

#16 · created Jun 20, 2018 by Celine Noirot V3.1 - Purge Jun 29, 2018 Bug Enhancement
- CLOSED
- 2
updated Jul 23, 2019
Add visualisation and compute of stored/purged size per group/lab

#12 · created Jun 19, 2018 by Celine Noirot V3.1 - Purge Jun 29, 2018 Enhancement New feature
- CLOSED
- 1
- 1
updated Jul 18, 2018
Add project extention

#17 · created Jun 20, 2018 by Celine Noirot V3.1 - Purge Jun 30, 2018 Bug Enhancement
- CLOSED
- 1
- 1
updated Jul 18, 2018
List all project even not obsolete

#18 · created Jun 20, 2018 by Celine Noirot V3.1 - Purge Jun 30, 2018 Enhancement
- CLOSED
- 2
updated Jun 28, 2018
Add total project size in purge demand email

#23 · created Jun 27, 2018 by Celine Noirot V3.1 - Purge Enhancement
- CLOSED
- 0
updated Jun 27, 2018
Modification du plugin nG6 typo3 pour utilisation sur php7 et typo3 V8

#29 · created Jul 30, 2018 by Gerald Salin V3.2 - Slurm Enhancement
- CLOSED
- 1
updated Aug 28, 2018
add link and name to runs and analyses and projects in the purge email

#31 · created Aug 02, 2018 by Gerald Salin V3.2.6 Enhancement Todo
- CLOSED
- 9
updated Sep 10, 2019
add manual for purging data

#32 · created Aug 02, 2018 by Gerald Salin V4 - Maintenance Enhancement
- 0
updated Aug 02, 2018
correct source indent (tabs/white space) for all files

#33 · created Aug 02, 2018 by Gerald Salin V4 - Maintenance Enhancement
- 0
updated Aug 29, 2019
Purge : Set Email From, in ng6 conf pi6 comme pour pi1

#39 · created Aug 08, 2018 by Celine Noirot V3.2.6 Enhancement
- CLOSED
- 1
updated Aug 30, 2019
Upgrade jflow: load server file

#42 · created Aug 09, 2018 by Celine Noirot V3.2 - Slurm Enhancement
- CLOSED
- 0
updated Aug 09, 2018
add a way to align illumina reads against a subset of reads

#66 · created Aug 28, 2018 by Gerald Salin V3.2 - Slurm Enhancement
- CLOSED
- 1
updated Sep 06, 2018
add md5sum for raw data in all pipelines

#68 · created Aug 29, 2018 by Gerald Salin V3.2 - Slurm Enhancement
- CLOSED
- 1
updated Sep 07, 2018
Add a super admin ng6 who can see all projects

#69 · created Sep 03, 2018 by Claire Kuchly Enhancement
- CLOSED
- 1
updated Sep 27, 2019
enhance disk usage with concatenatefilesgroups

#70 · created Sep 06, 2018 by Gerald Salin V3.2 - Slurm Enhancement
- CLOSED
- 0
updated Sep 17, 2018
clean pipeline outputs if succeeded

#71 · created Sep 06, 2018 by Gerald Salin V4 - Maintenance Enhancement
- 0
updated Sep 06, 2018
Enhancing the display of a project search result

#87 · created Oct 23, 2018 by Audrey Gibert Enhancement
- 0
updated Aug 29, 2019
Extra space between md5 and file name in md5sum.txt

#96 · created Nov 22, 2018 by Roxane Boyer Enhancement
- CLOSED
- 0
updated Dec 14, 2018
adapt visualisation of ONT versions (gridion and promethion)

#101 · created Jan 15, 2019 by Maxime Manno V3.2.3 Enhancement
- CLOSED
- 1
updated Jan 15, 2019
Amélioration de la FAQ

#102 · created Jan 29, 2019 by Roxane Boyer Enhancement
- CLOSED
- 4
updated Aug 02, 2019
Configuring different storage space

#106 · created Mar 11, 2019 by Celine Noirot V3.2.5 Enhancement Todo
- CLOSED
- 0
updated Sep 06, 2019
handle limit storage period/date depending on storage space parameter

#107 · created Mar 11, 2019 by Celine Noirot V3.2.5 Enhancement Todo
- CLOSED
- 1
updated Aug 30, 2019
export metadata

#108 · created Mar 11, 2019 by Celine Noirot V4 - Maintenance Enhancement
- 0
updated Aug 30, 2019
ftp server architecture

#109 · created Mar 11, 2019 by Celine Noirot V4 - Maintenance Enhancement
- 0
updated Aug 30, 2019
[ont-qc] Adding logs to ont-qc analysis 2 of 2 tasks completed

#111 · created Jun 26, 2019 by Maxime Manno V3.2.4 Jul 31, 2019 Enhancement New feature
- CLOSED
- 1
- 1
updated Jul 23, 2019
[ont-qc] Adding new analysis : Demultiplex Stat for ONT 5 of 5 tasks completed

#112 · created Jun 26, 2019 by Maxime Manno V4 - Maintenance Aug 31, 2019 Enhancement New feature
- CLOSED
- 5
updated Mar 25, 2021
[ont_qc] Add N90 and 5 longest reads informations

#113 · created Jul 23, 2019 by Maxime Manno V3.2.3.1 Enhancement
- CLOSED
- 0
updated Jul 24, 2019
Custom message for purged data

#116 · created Aug 28, 2019 by Romain Therville V3.2.5 Enhancement Todo
- CLOSED
- 6
updated Aug 30, 2019
Add duplication stat to alignmentStat analyze

#117 · created Aug 29, 2019 by Claire Kuchly V3.2.5 Enhancement
- CLOSED
- 0
updated Aug 30, 2019
add the retention policy to project view

#120 · created Aug 30, 2019 by Gerald Salin V3.2.6 Enhancement
- CLOSED
- 5
updated Jan 22, 2020
changes to NG6's database structure should appear in a .sql file

#122 · created Aug 30, 2019 by Romain Therville V3.2.6 Discussion Enhancement
- CLOSED
- 2
updated Oct 14, 2019
Add a new group superadmin

#126 · created Sep 10, 2019 by Celine Noirot V3.2.6 Enhancement
- CLOSED
- 12
updated Oct 29, 2019
Purge email should be send to all the users of the project.

#127 · created Sep 10, 2019 by Celine Noirot V3.2.6 Enhancement Todo
- CLOSED
- 11
updated Sep 20, 2019
Discard some email adress from purge email.

#128 · created Sep 10, 2019 by Celine Noirot V3.2.6 Enhancement Todo
- CLOSED
- 5
updated Sep 20, 2019
Script/workflow to migrate a list of project to from a space to another

#129 · created Sep 10, 2019 by Celine Noirot V3.2.7.5 Enhancement
- CLOSED
- 14
updated Nov 30, 2020
The static retention period given in the purge mail has to be computed

#137 · created Oct 24, 2019 by Romain Therville V3.2.6 Nov 21, 2019 Enhancement Unconformity
- CLOSED
- 1
updated Jan 27, 2020
manage run 10X with samples with custom index that have to be processed like 10X samples

#142 · created Nov 14, 2019 by Claire Kuchly V3.4 Enhancement New feature
- 1
updated Oct 12, 2021
There are hard-coded links in Admin>Extend Project>Project name column

#146 · created Nov 21, 2019 by Romain Therville V3.2.7 Bug Dysfunction Enhancement
- CLOSED
- 4
updated Jun 11, 2020
Add the duplicat rate without alignment in all illumina workflow

#148 · created Dec 02, 2019 by Claire Kuchly V3.4 Dec 31, 2019 Enhancement
- 3
updated Oct 12, 2021
[Sequel2] make new qc pipeline for Sequel2 data

#149 · created Dec 09, 2019 by Claire Kuchly V3.4 Jan 31, 2020 Enhancement New feature
- 0
updated Oct 12, 2021
Add a space id column in Administration > Mail obsolete project

#151 · created Dec 11, 2019 by Romain Therville V3.2.6 Enhancement
- CLOSED
- 4
updated Jan 16, 2020
Style error

#156 · created Jan 07, 2020 by Celine Noirot V3.2.6 Enhancement
- CLOSED
- 0
updated Apr 03, 2020
A rework of the purge processes is needed

#161 · created Jan 23, 2020 by Romain Therville V3.2.7 Enhancement
- CLOSED
- 10
updated Mar 04, 2020
[Sequel2] make available BAM format from addrun

#167 · created Feb 10, 2020 by Celine Vandecasteele V3.4 Enhancement
- 0
updated Oct 12, 2021
FAQ style is ugly

#169 · created Feb 11, 2020 by Celine Noirot V3.2.6 Enhancement
- CLOSED
- 1
updated Feb 11, 2020
[purge] link analyzes to runs in the email

#179 · created Apr 10, 2020 by Gerald Salin V3.4 Enhancement
- CLOSED
- 1
updated Oct 12, 2021
make filenames in NG6 uniq

#181 · created May 15, 2020 by Gerald Salin V4 - Maintenance Enhancement
- 0
updated May 15, 2020
[Web interface]Improve FAQ accesses 5 of 5 tasks completed

#182 · created May 15, 2020 by Audrey Gibert V3.3 Enhancement
- CLOSED
- 11
updated Sep 01, 2021
Adding a warning to prevent users from lauching 20+ direct url downloads at the same time

#185 · created Jun 18, 2020 by Romain Therville V3.4 Dysfunction Enhancement
- 0
updated Oct 12, 2021
put the addrawfile component generic for any type of file to be saved 0 of 2 tasks completed

#186 · created Jun 25, 2020 by Claire Kuchly V3.4 Sep 30, 2020 Enhancement
- 0
updated Oct 12, 2021
[IlluminaWF]Hiding some analyses per defaut

#188 · created Jul 15, 2020 by Audrey Gibert V4 - Maintenance Jul 1, 2021 Enhancement
- 0
updated Jul 15, 2020
GPDR

#189 · created Aug 25, 2020 by Gerald Salin V3.2.8 Enhancement
- CLOSED
- 2
updated Apr 23, 2021
The purge process should ignore hidden runs and analyses

#193 · created Feb 26, 2021 by Romain Therville V3.2.7.5 Mar 5, 2021 Enhancement Todo
- CLOSED
- 1
updated Mar 25, 2021
mail method : some people does not receive mails sent by ng6-slurm

#196 · created Apr 09, 2021 by Gerald Salin V3.2.8 Enhancement
- CLOSED
- 6
updated Apr 28, 2021
upgrade to run under typo3 v9

#198 · created Apr 23, 2021 by Gerald Salin V3.2.8 Enhancement
- CLOSED
- 1
updated Apr 28, 2021
update links

#199 · created Apr 28, 2021 by Gerald Salin V3.2.8.1 Enhancement
- CLOSED
- 2
updated Apr 28, 2021
allow to display all entries of a datatable in an analysis

#200 · created Apr 28, 2021 by Gerald Salin V3.2.8.1 Enhancement
- CLOSED
- 0
updated Apr 28, 2021
smarty deprecation warnins

#204 · created Apr 30, 2021 by Gerald Salin V3.2.8.1 Enhancement
- CLOSED
- 1
updated May 04, 2021
upgrade to typo3 v10

#213 · created Oct 11, 2021 by Gerald Salin V3.3 Enhancement
- CLOSED
- 0
updated Oct 12, 2021
add a link to the reinit password interface

#214 · created Oct 11, 2021 by Gerald Salin V3.3 Enhancement
- CLOSED
- 1
updated Oct 12, 2021
[IlluminaWF] Change algo use with BWA for ContaminationSearch analysis

#221 · created Feb 11, 2022 by Jules Sabban V3.3 Enhancement illumina_qc
- 1
updated Mar 10, 2022
Project page : Remove the "Raw data and analysis results use xxx"

#224 · created Apr 25, 2022 by Romain Therville V3.3 Enhancement
- CLOSED
- 0
updated Apr 26, 2022
[Purge] Do not purge the hidden runs and analyses

#225 · created Apr 25, 2022 by Romain Therville V3.3 Enhancement
- CLOSED
- 0
updated Apr 26, 2022
[ont_qc] Change end of sequencing report file

#227 · created May 10, 2022 by Jules Sabban V3.3 Enhancement
- CLOSED
- 0
updated May 11, 2022