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  • genotoul-bioinfo
  • ng6ng6
  • Issues

  • Open 15
  • Closed 55
  • All 70
New issue
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title
  • Infos générales sur la page purge
    #3 · created Mar 27, 2018 by Celine Noirot   V3.1 - Purge   Apr 18, 2018   Enhancement
    • CLOSED
    • 1
    updated Jun 19, 2018
  • Update of the picardtools
    #6 · created Apr 09, 2018 by Audrey Gibert   V3.2 - Slurm   Apr 27, 2018   Enhancement
    • CLOSED
    • 2
    updated Aug 02, 2018
  • Update of Samtools
    #7 · created Apr 09, 2018 by Maxime Manno   V3.2 - Slurm   Apr 30, 2018   Enhancement
    • CLOSED
    • 0
    updated Aug 01, 2018
  • Regenerate a password for users added by the project manager
    #9 · created Apr 19, 2018 by Audrey Gibert   Enhancement New feature Todo
    • CLOSED
    • 2
    updated Jan 22, 2020
  • flag project which all runs and analyses are purgeable
    #13 · created Jun 19, 2018 by Claire Kuchly   V3.1 - Purge   Jun 30, 2018   Enhancement
    • CLOSED
    • 1
    • 0
    updated Jul 18, 2018
  • [purge] : for projet who has no administror : mail sent to all users project
    #14 · created Jun 19, 2018 by Claire Kuchly   V3.1 - Purge   Jun 30, 2018   Enhancement
    • CLOSED
    • 1
    updated Aug 28, 2018
  • generate script to compute storage size for extention
    #16 · created Jun 20, 2018 by Celine Noirot   V3.1 - Purge   Jun 29, 2018   Bug Enhancement
    • CLOSED
    • 2
    updated Jul 23, 2019
  • Add visualisation and compute of stored/purged size per group/lab
    #12 · created Jun 19, 2018 by Celine Noirot   V3.1 - Purge   Jun 29, 2018   Enhancement New feature
    • CLOSED
    • 1
    • 1
    updated Jul 18, 2018
  • Add project extention
    #17 · created Jun 20, 2018 by Celine Noirot   V3.1 - Purge   Jun 30, 2018   Bug Enhancement
    • CLOSED
    • 1
    • 1
    updated Jul 18, 2018
  • List all project even not obsolete
    #18 · created Jun 20, 2018 by Celine Noirot   V3.1 - Purge   Jun 30, 2018   Enhancement
    • CLOSED
    • 2
    updated Jun 28, 2018
  • Add total project size in purge demand email
    #23 · created Jun 27, 2018 by Celine Noirot   V3.1 - Purge   Enhancement
    • CLOSED
    • 0
    updated Jun 27, 2018
  • Modification du plugin nG6 typo3 pour utilisation sur php7 et typo3 V8
    #29 · created Jul 30, 2018 by Gerald Salin   V3.2 - Slurm   Enhancement
    • CLOSED
    • 1
    updated Aug 28, 2018
  • add link and name to runs and analyses and projects in the purge email
    #31 · created Aug 02, 2018 by Gerald Salin   V3.2.6   Enhancement Todo
    • CLOSED
    • 9
    updated Sep 10, 2019
  • add manual for purging data
    #32 · created Aug 02, 2018 by Gerald Salin   V4 - Maintenance   Enhancement
    • 0
    updated Aug 02, 2018
  • correct source indent (tabs/white space) for all files
    #33 · created Aug 02, 2018 by Gerald Salin   V4 - Maintenance   Enhancement
    • 0
    updated Aug 29, 2019
  • Purge : Set Email From, in ng6 conf pi6 comme pour pi1
    #39 · created Aug 08, 2018 by Celine Noirot   V3.2.6   Enhancement
    • CLOSED
    • 1
    updated Aug 30, 2019
  • Upgrade jflow: load server file
    #42 · created Aug 09, 2018 by Celine Noirot   V3.2 - Slurm   Enhancement
    • CLOSED
    • 0
    updated Aug 09, 2018
  • add a way to align illumina reads against a subset of reads
    #66 · created Aug 28, 2018 by Gerald Salin   V3.2 - Slurm   Enhancement
    • CLOSED
    • 1
    updated Sep 06, 2018
  • add md5sum for raw data in all pipelines
    #68 · created Aug 29, 2018 by Gerald Salin   V3.2 - Slurm   Enhancement
    • CLOSED
    • 1
    updated Sep 07, 2018
  • Add a super admin ng6 who can see all projects
    #69 · created Sep 03, 2018 by Claire Kuchly   Enhancement
    • CLOSED
    • 1
    updated Sep 27, 2019
  • enhance disk usage with concatenatefilesgroups
    #70 · created Sep 06, 2018 by Gerald Salin   V3.2 - Slurm   Enhancement
    • CLOSED
    • 0
    updated Sep 17, 2018
  • clean pipeline outputs if succeeded
    #71 · created Sep 06, 2018 by Gerald Salin   V4 - Maintenance   Enhancement
    • 0
    updated Sep 06, 2018
  • Enhancing the display of a project search result
    #87 · created Oct 23, 2018 by Audrey Gibert   Enhancement
    • 0
    updated Aug 29, 2019
  • Extra space between md5 and file name in md5sum.txt
    #96 · created Nov 22, 2018 by Roxane Boyer   Enhancement
    • CLOSED
    • 0
    updated Dec 14, 2018
  • adapt visualisation of ONT versions (gridion and promethion)
    #101 · created Jan 15, 2019 by Maxime Manno   V3.2.3   Enhancement
    • CLOSED
    • 1
    updated Jan 15, 2019
  • Amélioration de la FAQ
    #102 · created Jan 29, 2019 by Roxane Boyer   Enhancement
    • CLOSED
    • 4
    updated Aug 02, 2019
  • Configuring different storage space
    #106 · created Mar 11, 2019 by Celine Noirot   V3.2.5   Enhancement Todo
    • CLOSED
    • 0
    updated Sep 06, 2019
  • handle limit storage period/date depending on storage space parameter
    #107 · created Mar 11, 2019 by Celine Noirot   V3.2.5   Enhancement Todo
    • CLOSED
    • 1
    updated Aug 30, 2019
  • export metadata
    #108 · created Mar 11, 2019 by Celine Noirot   V4 - Maintenance   Enhancement
    • 0
    updated Aug 30, 2019
  • ftp server architecture
    #109 · created Mar 11, 2019 by Celine Noirot   V4 - Maintenance   Enhancement
    • 0
    updated Aug 30, 2019
  • [ont-qc] Adding logs to ont-qc analysis   2 of 2 tasks completed
    #111 · created Jun 26, 2019 by Maxime Manno   V3.2.4   Jul 31, 2019   Enhancement New feature
    • CLOSED
    • 1
    • 1
    updated Jul 23, 2019
  • [ont-qc] Adding new analysis : Demultiplex Stat for ONT   5 of 5 tasks completed
    #112 · created Jun 26, 2019 by Maxime Manno   V4 - Maintenance   Aug 31, 2019   Enhancement New feature
    • CLOSED
    • 5
    updated Mar 25, 2021
  • [ont_qc] Add N90 and 5 longest reads informations
    #113 · created Jul 23, 2019 by Maxime Manno   V3.2.3.1   Enhancement
    • CLOSED
    • 0
    updated Jul 24, 2019
  • Custom message for purged data
    #116 · created Aug 28, 2019 by Romain Therville   V3.2.5   Enhancement Todo
    • CLOSED
    • 6
    updated Aug 30, 2019
  • Add duplication stat to alignmentStat analyze
    #117 · created Aug 29, 2019 by Claire Kuchly   V3.2.5   Enhancement
    • CLOSED
    • 0
    updated Aug 30, 2019
  • add the retention policy to project view
    #120 · created Aug 30, 2019 by Gerald Salin   V3.2.6   Enhancement
    • CLOSED
    • 5
    updated Jan 22, 2020
  • changes to NG6's database structure should appear in a .sql file
    #122 · created Aug 30, 2019 by Romain Therville   V3.2.6   Discussion Enhancement
    • CLOSED
    • 2
    updated Oct 14, 2019
  • Add a new group superadmin
    #126 · created Sep 10, 2019 by Celine Noirot   V3.2.6   Enhancement
    • CLOSED
    • 12
    updated Oct 29, 2019
  • Purge email should be send to all the users of the project.
    #127 · created Sep 10, 2019 by Celine Noirot   V3.2.6   Enhancement Todo
    • CLOSED
    • 11
    updated Sep 20, 2019
  • Discard some email adress from purge email.
    #128 · created Sep 10, 2019 by Celine Noirot   V3.2.6   Enhancement Todo
    • CLOSED
    • 5
    updated Sep 20, 2019
  • Script/workflow to migrate a list of project to from a space to another
    #129 · created Sep 10, 2019 by Celine Noirot   V3.2.7.5   Enhancement
    • CLOSED
    • 14
    updated Nov 30, 2020
  • The static retention period given in the purge mail has to be computed
    #137 · created Oct 24, 2019 by Romain Therville   V3.2.6   Nov 21, 2019   Enhancement Unconformity
    • CLOSED
    • 1
    updated Jan 27, 2020
  • manage run 10X with samples with custom index that have to be processed like 10X samples
    #142 · created Nov 14, 2019 by Claire Kuchly   V3.4   Enhancement New feature
    • 1
    updated Oct 12, 2021
  • There are hard-coded links in Admin>Extend Project>Project name column
    #146 · created Nov 21, 2019 by Romain Therville   V3.2.7   Bug Dysfunction Enhancement
    • CLOSED
    • 4
    updated Jun 11, 2020
  • Add the duplicat rate without alignment in all illumina workflow
    #148 · created Dec 02, 2019 by Claire Kuchly   V3.4   Dec 31, 2019   Enhancement
    • 3
    updated Oct 12, 2021
  • [Sequel2] make new qc pipeline for Sequel2 data
    #149 · created Dec 09, 2019 by Claire Kuchly   V3.4   Jan 31, 2020   Enhancement New feature
    • 0
    updated Oct 12, 2021
  • Add a space id column in Administration > Mail obsolete project
    #151 · created Dec 11, 2019 by Romain Therville   V3.2.6   Enhancement
    • CLOSED
    • 4
    updated Jan 16, 2020
  • Style error
    #156 · created Jan 07, 2020 by Celine Noirot   V3.2.6   Enhancement
    • CLOSED
    • 0
    updated Apr 03, 2020
  • A rework of the purge processes is needed
    #161 · created Jan 23, 2020 by Romain Therville   V3.2.7   Enhancement
    • CLOSED
    • 10
    updated Mar 04, 2020
  • [Sequel2] make available BAM format from addrun
    #167 · created Feb 10, 2020 by Celine Vandecasteele   V3.4   Enhancement
    • 0
    updated Oct 12, 2021
  • FAQ style is ugly
    #169 · created Feb 11, 2020 by Celine Noirot   V3.2.6   Enhancement
    • CLOSED
    • 1
    updated Feb 11, 2020
  • [purge] link analyzes to runs in the email
    #179 · created Apr 10, 2020 by Gerald Salin   V3.4   Enhancement
    • CLOSED
    • 1
    updated Oct 12, 2021
  • make filenames in NG6 uniq
    #181 · created May 15, 2020 by Gerald Salin   V4 - Maintenance   Enhancement
    • 0
    updated May 15, 2020
  • [Web interface]Improve FAQ accesses   5 of 5 tasks completed
    #182 · created May 15, 2020 by Audrey Gibert   V3.3   Enhancement
    • CLOSED
    • 11
    updated Sep 01, 2021
  • Adding a warning to prevent users from lauching 20+ direct url downloads at the same time
    #185 · created Jun 18, 2020 by Romain Therville   V3.4   Dysfunction Enhancement
    • 0
    updated Oct 12, 2021
  • put the addrawfile component generic for any type of file to be saved   0 of 2 tasks completed
    #186 · created Jun 25, 2020 by Claire Kuchly   V3.4   Sep 30, 2020   Enhancement
    • 0
    updated Oct 12, 2021
  • [IlluminaWF]Hiding some analyses per defaut
    #188 · created Jul 15, 2020 by Audrey Gibert   V4 - Maintenance   Jul 1, 2021   Enhancement
    • 0
    updated Jul 15, 2020
  • GPDR
    #189 · created Aug 25, 2020 by Gerald Salin   V3.2.8   Enhancement
    • CLOSED
    • 2
    updated Apr 23, 2021
  • The purge process should ignore hidden runs and analyses
    #193 · created Feb 26, 2021 by Romain Therville   V3.2.7.5   Mar 5, 2021   Enhancement Todo
    • CLOSED
    • 1
    updated Mar 25, 2021
  • mail method : some people does not receive mails sent by ng6-slurm
    #196 · created Apr 09, 2021 by Gerald Salin   V3.2.8   Enhancement
    • CLOSED
    • 6
    updated Apr 28, 2021
  • upgrade to run under typo3 v9
    #198 · created Apr 23, 2021 by Gerald Salin   V3.2.8   Enhancement
    • CLOSED
    • 1
    updated Apr 28, 2021
  • update links
    #199 · created Apr 28, 2021 by Gerald Salin   V3.2.8.1   Enhancement
    • CLOSED
    • 2
    updated Apr 28, 2021
  • allow to display all entries of a datatable in an analysis
    #200 · created Apr 28, 2021 by Gerald Salin   V3.2.8.1   Enhancement
    • CLOSED
    • 0
    updated Apr 28, 2021
  • smarty deprecation warnins
    #204 · created Apr 30, 2021 by Gerald Salin   V3.2.8.1   Enhancement
    • CLOSED
    • 1
    updated May 04, 2021
  • upgrade to typo3 v10
    #213 · created Oct 11, 2021 by Gerald Salin   V3.3   Enhancement
    • CLOSED
    • 0
    updated Oct 12, 2021
  • add a link to the reinit password interface
    #214 · created Oct 11, 2021 by Gerald Salin   V3.3   Enhancement
    • CLOSED
    • 1
    updated Oct 12, 2021
  • [IlluminaWF] Change algo use with BWA for ContaminationSearch analysis
    #221 · created Feb 11, 2022 by Jules Sabban   V3.3   Enhancement illumina_qc
    • 1
    updated Mar 10, 2022
  • Project page : Remove the "Raw data and analysis results use xxx"
    #224 · created Apr 25, 2022 by Romain Therville   V3.3   Enhancement
    • CLOSED
    • 0
    updated Apr 26, 2022
  • [Purge] Do not purge the hidden runs and analyses
    #225 · created Apr 25, 2022 by Romain Therville   V3.3   Enhancement
    • CLOSED
    • 0
    updated Apr 26, 2022
  • [ont_qc] Change end of sequencing report file
    #227 · created May 10, 2022 by Jules Sabban   V3.3   Enhancement
    • CLOSED
    • 0
    updated May 11, 2022