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Suite à des problèmes rencontrés dans les jobs mobilisant une image Docker in Docker (dind), des solutions de contournement ont été proposées.
Voir #148 pour les problèmes de « timeout » sur les runners « test » et #149 pour les problèmes d’accès au démon docker sur les runners « stables ». N’hésitez pas à demander/proposer des compléments aux informations fournies.

  • genotoul-bioinfo
  • ng6ng6
  • Issues
  • #155
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Open
Issue created Jan 07, 2020 by Celine Noirot@celine.noirotOwner

Warning on hidden column while create a run, analyse or projet

` ng6-test@ng6-test: /work/ng6-test/jflow_rtherville $python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py addanalysis --admin-login cnoirot --run-id 15165 --data-file /work/ng6-test/jflow_rtherville/test.txt --analysis-name "Analyse de run" --analysis-description "68 + 20 Manech" --analysis-software "GATK..." --analysis-software-options "-" --analysis-software-version "GATK:3.7 - Picard:2.1.1 - Bwa:0.7.15 - Samtools:1.3.1 - FastQC:v0.11.2 - Bcftools:1.3.1"

parsing Makeflow...

checking Makeflow for consistency...

Makeflow has 1 rules.

starting workflow....

submitting job: /work/ng6-test/jflow_rtherville/work/addanalysis/wf000499/.working/153171b866/_Stash/0/0/0/w0000000 none /work/ng6-test/jflow_rtherville/work/addanalysis/wf000499/BasicAnalysis_default/analysis.cfg /work/ng6-test/jflow_rtherville/tmp/tmp22_7y9dk.dump

submitted job 16508

**/save/ng6-test/src/ng6-git-rtherville/src/weaver/../pymysql/cursors.py:146: Warning: Incorrect integer value: 'True' for column 'hidden' at row 1 result = self._query(query) **

job 16508 completed

nothing left to do.

sending incremental file list

./

test.txt

sent 166 bytes received 34 bytes 400.00 bytes/sec

total size is 61 speedup is 0.30

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Results

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Edited Jan 07, 2020 by Celine Noirot
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