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```mermaid
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graph TD
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A[Raw data]-->B[Cutadapt]
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B-->C[Sickle]
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A-->|fastQC function|D[FastQC]
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B-->|fastQC function|E[FastQC]
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C-->|fastQC function|F[FastQC]
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B-->G[Alignment_filter]
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C-->G[Alignment_filter]
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G-->|fastQC function|H[FastQC]
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I[index_db_kaiju]-->J[kaiju]
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G-->J[kaiju]
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G-->K[metaspades]
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G-->L[megahit]
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K-->M[prokka]
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M-->N[individual_cd_hit]
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N-->O[global_cd_hit]
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L-->M[prokka]
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O-->|cd_hit_produce_table_clstr.py|P[cd_hit_produce_table_clstr]
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``` |
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\ No newline at end of file |