... | ... | @@ -500,6 +500,7 @@ sed '1d' Sample3WithoutHuman_kaiju_MEM_verbose_summary_species.tsv > Sample3With |
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sort -t $'\t' -k 5,5 Sample1WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv > Sample1WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv.sort
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sort -t $'\t' -k 5,5 Sample2WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv > Sample2WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv.sort
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sort -t $'\t' -k 5,5 Sample3WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv > Sample3WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv.sort
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...
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```
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### Join of 3 tables (3 samples)
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... | ... | @@ -507,6 +508,7 @@ sort -t $'\t' -k 5,5 Sample3WithoutHuman_kaiju_MEM_verbose_summary_species_nohea |
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join -t $'\t' -a 1 -a 2 -1 5 -2 5 -e 0 -o auto Sample1WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv.sort Sample2WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv.sort > kaiju_join_Sample1_Sample2.txt
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sort -t $'\t' -k 1,1 kaiju_join_Sample1_Sample2.txt > kaiju_join_Sample1_Sample2.txt.sort
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join -t $'\t' -a 1 -a 2 -1 1 -2 5 -e 0 -o auto kaiju_join_Sample1_Sample2.txt Sample3WithoutHuman_kaiju_MEM_verbose_summary_species_noheader.csv.sort > kaiju_join_Sample1_Sample2_Sample3.txt
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...
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```
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## Kaiju MEM : merge avec fichiers kraken
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... | ... | |